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IMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026850

Arc-Vir

IMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026850

Identity

Kingdom:
archaea

Quality

59.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 183-258
PDB
Domain cluster: rep: IMGVR_UViG_3300035531_000244-3300035531-Ga0376493_010374_334_924__D107-181
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.67 59.0 4.52e-01 100.0% 75.3%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 45.0 4.85e-01 88.2% 83.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.61 52.0 4.36e-01 100.0% 88.6%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.59 52.0 4.56e-01 96.1% 100.0%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.56 40.0 4.35e-01 97.4% 90.3%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 42.0 4.05e-01 81.6% 85.2%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 44.0 3.83e-01 86.8% 98.3%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.55 41.0 4.32e-01 97.4% 90.9%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 40.0 4.06e-01 90.8% 82.2%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.54 46.0 4.20e-01 90.8% 84.5%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.53 44.0 4.47e-01 97.4% 92.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 44.0 3.38e-01 94.7% 92.0%
1v7wA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 36.0 2.54e-01 75.0% 81.5%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 3.37e-01 84.2% 80.9%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 36.0 3.44e-01 90.8% 61.8%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.52 39.0 2.65e-01 82.9% 98.4%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 35.0 2.84e-01 72.4% 91.7%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.51 41.0 3.68e-01 98.7% 62.9%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 37.0 3.84e-01 85.5% 84.1%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.76e-01 93.4% 62.9%
3actA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.51 42.0 2.90e-01 94.7% 85.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4153553 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 36.0 4.56e-01 90.8% 75.6%
3979006 77.1.1.15 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › RHS_repeat, DUF6531, TEN_YD-shell 0.71 47.0 2.85e-01 92.1% 11.0%
3274295 3862.1.1.5 ↗ extended segments › Envelope small membrane protein › Envelope small membrane protein › Envelope small membrane protein › RENR_N 0.67 57.0 3.56e-01 94.7% 24.7%
5013797 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.64 46.0 4.36e-01 75.0% 87.8%
3520661 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 44.0 2.70e-01 72.4% 27.5%
5041310 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.63 50.0 3.55e-01 100.0% 27.5%
4208229 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.63 32.0 3.81e-01 93.4% 72.0%
3961809 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.61 45.0 4.44e-01 100.0% 72.5%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.60 45.0 4.06e-01 80.3% 73.3%
5058484 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 39.0 4.01e-01 94.7% 71.4%
4978129 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.59 45.0 2.81e-01 80.3% 20.2%
3416069 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 40.0 4.16e-01 100.0% 75.7%
5017090 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.59 41.0 4.10e-01 73.7% 95.0%
3279244 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.22e-01 85.5% 68.0%
4950889 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 36.0 3.70e-01 92.1% 65.3%
1892334 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.57 40.0 3.88e-01 90.8% 64.4%
5036086 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.29e-01 82.9% 96.2%
5005470 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 41.0 3.80e-01 100.0% 60.0%
4000169 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.56 49.0 3.42e-01 100.0% 60.0%
3261866 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.56 42.0 2.93e-01 80.3% 82.8%
4601711 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.55 42.0 3.86e-01 98.7% 63.2%
3228787 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.55 48.0 3.28e-01 100.0% 50.7%
4066022 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 39.0 2.49e-01 75.0% 82.5%
4971298 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 35.0 3.58e-01 93.4% 66.7%
4024234 2003.1.5.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.54 40.0 2.63e-01 78.9% 48.8%
3509084 5.1.10.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › Vps16_N 0.54 38.0 3.94e-01 90.8% 80.0%
4030191 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 39.0 2.25e-01 76.3% 25.1%
3996624 5.1.5.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.53 42.0 2.70e-01 100.0% 17.3%
3586307 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 35.0 2.93e-01 93.4% 39.2%
5071830 220.1.1.291 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_4 0.53 44.0 4.22e-01 93.4% 85.6%
2141157 59.1.1.4 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Ctf8 0.53 37.0 3.05e-01 71.1% 47.7%
3629722 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 35.0 2.85e-01 93.4% 36.4%
4302938 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.53 40.0 3.89e-01 81.6% 87.1%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.53 42.0 3.91e-01 90.8% 94.0%
3924808 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.53 45.0 4.42e-01 92.1% 85.0%
3739513 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.53 44.0 3.15e-01 96.1% 78.3%
11227 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.52 42.0 3.94e-01 90.8% 70.2%
4928207 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 34.0 3.49e-01 92.1% 69.3%
3537919 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.51 43.0 4.03e-01 89.5% 84.4%
4679871 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.50 35.0 3.47e-01 86.8% 68.8%
3175055 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.50 34.0 2.43e-01 98.7% 20.4%
D2 medium residues 1-65
PDB
D3 medium residues 85-162
PDB