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IMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026855
Arc-VirIMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026855
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-121
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25941.1 best | PDDEXK_16 | 63.0 | 4.60e-17 | 98.3% | 62.8% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1eyuA00 | 3.40.210.10 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › PVUII Endonuclease, subunit A | 0.73 | 65.0 | 5.89e-01 | 96.6% | 76.9% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 49.0 | 5.26e-01 | 81.0% | 88.5% |
| 2dbsA00 | 3.40.1350.20 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.66 | 44.0 | 5.16e-01 | 89.7% | 100.0% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.63 | 56.0 | 4.43e-01 | 98.3% | 76.2% |
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 49.0 | 4.97e-01 | 84.5% | 87.9% |
| 3fovA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 47.0 | 5.01e-01 | 81.9% | 99.0% |
| 4ftfA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.60 | 43.0 | 4.41e-01 | 84.5% | 77.1% |
| 2cxhA01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.60 | 39.0 | 3.42e-01 | 97.4% | 43.1% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.58 | 51.0 | 3.79e-01 | 100.0% | 62.9% |
| 3npdA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.56 | 40.0 | 4.06e-01 | 87.1% | 75.2% |
| 4v2pA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 34.0 | 3.10e-01 | 81.0% | 45.8% |
| 7eqiA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 36.0 | 3.26e-01 | 81.9% | 49.7% |
| 4cgxA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.55 | 43.0 | 3.81e-01 | 81.9% | 63.4% |
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 39.0 | 3.61e-01 | 83.6% | 58.5% |
| 3olqA00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 47.0 | 3.47e-01 | 95.7% | 92.2% |
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 47.0 | 4.58e-01 | 95.7% | 99.2% |
| 2wteA01 | 3.40.50.11700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 3.97e-01 | 82.8% | 94.2% |
| 4yxtA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 39.0 | 3.64e-01 | 82.8% | 59.2% |
| 5ocbA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 39.0 | 3.60e-01 | 79.3% | 86.5% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 35.0 | 3.17e-01 | 81.9% | 49.1% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.52 | 32.0 | 3.74e-01 | 81.9% | 87.8% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.51 | 40.0 | 4.07e-01 | 83.6% | 98.3% |
| 3vnrA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.51 | 44.0 | 3.15e-01 | 98.3% | 59.8% |
| 4p22A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 3.57e-01 | 94.8% | 84.3% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.51 | 32.0 | 3.63e-01 | 79.3% | 85.7% |
| 1amuA02 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 39.0 | 3.71e-01 | 83.6% | 82.1% |
| 1y0kA00 | 3.40.1540.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein pa4535 › Protein of unknown function DUF1780, putative endonuclease | 0.50 | 44.0 | 3.82e-01 | 97.4% | 86.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5005296 | 2008.1.1.232 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF25941 | 0.82 | 77.0 | 7.64e-01 | 99.1% | 100.0% |
| 4284098 | 2008.1.1.198 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6998 | 0.79 | 69.0 | 6.60e-01 | 100.0% | 82.3% |
| 388456 | 2008.1.1.41 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-PvuII | 0.71 | 64.0 | 5.72e-01 | 96.6% | 73.0% |
| 11031 | 2008.1.1.40 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-MspI | 0.70 | 61.0 | 4.64e-01 | 94.0% | 91.6% |
| 3607869 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.66 | 55.0 | 4.05e-01 | 90.5% | 51.8% |
| 3693544 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.65 | 54.0 | 3.81e-01 | 87.9% | 35.2% |
| 3725765 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.65 | 54.0 | 4.41e-01 | 88.8% | 57.1% |
| 3592513 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 54.0 | 3.83e-01 | 90.5% | 47.0% |
| 3710451 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.64 | 54.0 | 3.82e-01 | 90.5% | 46.2% |
| 3926509 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.63 | 53.0 | 4.01e-01 | 88.8% | 50.6% |
| 3925198 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.63 | 53.0 | 3.77e-01 | 89.7% | 40.0% |
| None | — | 0.63 | 53.0 | 3.84e-01 | 90.5% | 41.9% | |
| 3310614 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.63 | 53.0 | 3.79e-01 | 91.4% | 38.2% |
| 3274283 | 2008.1.1.82 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 | 0.63 | 48.0 | 4.38e-01 | 82.8% | 87.5% |
| 4011995 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.62 | 50.0 | 4.56e-01 | 86.2% | 96.1% |
| 3883797 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.62 | 54.0 | 3.86e-01 | 94.0% | 37.8% |
| 3393164 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.61 | 52.0 | 3.63e-01 | 93.1% | 41.0% |
| 5011530 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.61 | 39.0 | 3.39e-01 | 97.4% | 41.7% |
| 4059727 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.60 | 38.0 | 3.41e-01 | 96.6% | 44.2% |
| 4035993 | 2008.1.1.172 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26318 | 0.59 | 50.0 | 4.11e-01 | 92.2% | 81.9% |
| 3510537 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.59 | 37.0 | 3.28e-01 | 97.4% | 41.4% |
| 3390489 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.59 | 51.0 | 3.56e-01 | 94.0% | 43.3% |
| 3003620 | 2003.1.9.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins | 0.57 | 45.0 | 4.32e-01 | 94.8% | 72.9% |
| 4570247 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.57 | 47.0 | 3.28e-01 | 90.5% | 68.5% |
| None | — | 0.57 | 48.0 | 3.58e-01 | 91.4% | 57.8% | |
| 4927112 | 11.1.1.1268 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27154 | 0.57 | 34.0 | 3.68e-01 | 86.2% | 69.0% |
| 3628796 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.57 | 42.0 | 3.04e-01 | 76.7% | 75.2% |
| 4929410 | 7601.1.1.0 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain | 0.56 | 48.0 | 4.02e-01 | 92.2% | 85.5% |
| 4944176 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.56 | 49.0 | 3.78e-01 | 94.0% | 79.6% |
| None | — | 0.56 | 47.0 | 3.32e-01 | 91.4% | 65.4% | |
| 5046301 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.56 | 49.0 | 3.77e-01 | 94.0% | 80.8% |
| 4252932 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.56 | 47.0 | 3.38e-01 | 91.4% | 61.5% |
| 3715192 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 49.0 | 4.14e-01 | 97.4% | 91.3% |
| 1878848 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.55 | 43.0 | 3.70e-01 | 82.8% | 75.5% |
| 4930787 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.55 | 43.0 | 4.40e-01 | 96.6% | 87.3% |
| 4931280 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.55 | 49.0 | 3.81e-01 | 96.6% | 82.1% |
| 4324379 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.54 | 46.0 | 3.25e-01 | 90.5% | 65.0% |
| 3838717 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.54 | 41.0 | 3.08e-01 | 81.0% | 52.6% |
| None | — | 0.54 | 41.0 | 2.99e-01 | 79.3% | 77.1% | |
| 4365754 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.54 | 45.0 | 3.81e-01 | 92.2% | 73.0% |
| 5045647 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.54 | 47.0 | 3.71e-01 | 95.7% | 83.3% |
| 5025191 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.54 | 41.0 | 3.45e-01 | 81.0% | 81.2% |
| 4312961 | 3148.1.1.0 ↗ | a+b two layers › putative secreted protein PA3611 › putative secreted protein PA3611 › putative secreted protein PA3611 | 0.53 | 38.0 | 3.91e-01 | 87.1% | 80.6% |
| 4031765 | 3535.1.1.1 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS | 0.52 | 39.0 | 3.94e-01 | 80.2% | 95.8% |
| 3947609 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 41.0 | 3.04e-01 | 85.3% | 55.2% |
| 4152428 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 40.0 | 2.86e-01 | 81.9% | 82.0% |