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IMGVR_UViG_3300031957_002475-3300031957-Ga0326497_10078742

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300031957_002475-3300031957-Ga0326497_10078742 ↗
Kingdom:: archaea

Quality

74.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-141

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06714.18 best	Gp5_OB	47.9	2.40e-12	50.8%	38.9%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qr8A01	2.40.50.230	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain	0.77	43.0	5.17e-01	100.0%	81.0%
2dgyA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.77	41.0	5.04e-01	100.0%	81.0%
1k3rA02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.75	35.0	4.91e-01	99.2%	91.5%
4rg1A02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.72	36.0	4.87e-01	100.0%	92.3%
2eqsA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.69	42.0	4.87e-01	100.0%	84.3%
2ja9A01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.68	44.0	5.29e-01	100.0%	96.4%
2ba0A02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.66	40.0	4.72e-01	100.0%	86.2%
3ntkB01	2.40.50.790	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.59	36.0	4.13e-01	99.2%	84.9%
4wsiA02	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.59	26.0	3.44e-01	100.0%	75.8%
4ifdI02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.58	44.0	4.18e-01	100.0%	67.4%
3gw6A03	3.30.2460.10	Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain	0.58	27.0	3.62e-01	91.0%	87.7%
4krtB03	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.54	25.0	3.23e-01	98.4%	77.6%
2wadA01	6.20.70.10	Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; ›	0.53	17.0	2.68e-01	100.0%	90.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4995814	2.7.1.1 ↗	beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V	0.88	58.0	5.19e-01	100.0%	50.6%
4930895	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.72	39.0	4.72e-01	100.0%	80.0%
3427504	4.1.1.150 ↗	beta barrels › SH3 › SH3 › SH3 › DUF3123	0.68	26.0	3.44e-01	100.0%	61.4%
5035697	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.65	33.0	4.22e-01	100.0%	89.2%
4104974	2.1.1.7 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1	0.56	39.0	4.36e-01	100.0%	91.6%
5056972	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.54	39.0	4.30e-01	100.0%	91.0%
3730893	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.51	31.0	3.42e-01	91.0%	76.8%

D2 high residues 184-361

PDB

Domain cluster: rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05257.23 best	CHAP	26.4	1.10e-05	50.6%	76.5%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h41A03	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.77	52.0	6.15e-01	100.0%	96.0%
4cshA00	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.70	59.0	6.14e-01	100.0%	95.7%
3npfA03	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.69	50.0	5.30e-01	100.0%	82.0%
4hffA00	3.90.1720.70	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) ›	0.65	52.0	5.59e-01	100.0%	96.8%
6ijfC01	3.90.1720.80	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) ›	0.64	34.0	4.44e-01	100.0%	94.6%
7oc3A01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.63	34.0	4.57e-01	77.0%	100.0%
2vobB02	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.63	56.0	5.25e-01	97.2%	78.0%
3a2yA00	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.61	56.0	5.54e-01	97.2%	94.1%
2xzlA02	2.40.30.230	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.56	25.0	3.62e-01	88.2%	91.1%
2gk6A02	2.40.30.230	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.55	25.0	3.56e-01	88.2%	90.4%
8aa9A01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	23.0	2.76e-01	84.8%	58.8%
5fmvA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	20.0	2.77e-01	88.2%	66.7%
2wbfX00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.51	47.0	4.12e-01	100.0%	95.8%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3177469	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.67	26.0	4.05e-01	100.0%	90.0%
3702189	219.1.1.28 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP	0.62	56.0	5.32e-01	96.6%	91.4%
3716073	219.1.1.28 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP	0.62	57.0	5.38e-01	97.2%	87.3%
3934278	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.59	36.0	4.40e-01	82.6%	94.8%
3727542	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	27.0	3.65e-01	91.6%	84.4%
5050697	375.1.1.21 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1	0.55	17.0	3.01e-01	95.5%	88.0%
3218475	4.1.1.390 ↗	beta barrels › SH3 › SH3 › SH3 › PF29855	0.55	35.0	4.09e-01	83.7%	93.3%
3197575	2.1.1.1 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23	0.53	21.0	2.86e-01	84.3%	68.9%
3736955	3497.1.1.0 ↗	beta barrels › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain	0.52	31.0	3.69e-01	91.0%	84.8%
3486847	4.1.1.284 ↗	beta barrels › SH3 › SH3 › SH3 › SBNO	0.52	26.0	3.28e-01	100.0%	79.0%