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IMGVR_UViG_3300031992_000232-3300031992-Ga0310694_1000082035
Arc-VirIMGVR_UViG_3300031992_000232-3300031992-Ga0310694_1000082035
Identity
- Kingdom:
- archaea
Quality
71.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-55
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3imoC00 | 3.30.920.70 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › | 0.69 | 56.0 | 4.41e-01 | 100.0% | 41.1% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 47.0 | 4.58e-01 | 71.4% | 74.1% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.69 | 54.0 | 4.24e-01 | 87.8% | 57.8% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.69 | 54.0 | 4.98e-01 | 95.9% | 68.2% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 57.0 | 5.47e-01 | 98.0% | 89.5% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.61 | 50.0 | 4.45e-01 | 98.0% | 63.6% |
| 1eg3A02 | 6.10.140.70 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 40.0 | 4.10e-01 | 79.6% | 69.4% |
| 2yfqB01 | 1.10.8.1210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 43.0 | 4.27e-01 | 77.6% | 75.0% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.58 | 42.0 | 3.84e-01 | 91.8% | 53.7% |
| 1fp1D02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 46.0 | 2.98e-01 | 93.9% | 42.1% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.55 | 43.0 | 3.47e-01 | 89.8% | 56.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3808261 | 3826.1.1.27 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF3754 | 0.83 | 68.0 | 5.68e-01 | 91.8% | 54.1% |
| 3806943 | 375.1.9.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › DUF3754 | 0.83 | 69.0 | 5.75e-01 | 93.9% | 54.1% |
| 4940281 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.70 | 57.0 | 5.27e-01 | 91.8% | 90.8% |
| 4635599 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.70 | 50.0 | 3.61e-01 | 75.5% | 29.6% |
| 4947125 | 832.1.1.2 ↗ | a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › eRF1_2 | 0.69 | 57.0 | 4.26e-01 | 100.0% | 37.1% |
| 4971109 | 832.1.1.1 ↗ | a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › eRF1_1 | 0.68 | 56.0 | 4.20e-01 | 98.0% | 37.0% |
| 3397383 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.68 | 40.0 | 4.05e-01 | 83.7% | 56.0% |
| 4816886 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.64 | 53.0 | 4.99e-01 | 93.9% | 75.0% |
| 3224794 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.64 | 52.0 | 4.58e-01 | 93.9% | 73.3% |
| 3218541 | 109.7.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › RLL | 0.57 | 47.0 | 3.86e-01 | 91.8% | 97.8% |