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IMGVR_UViG_3300032006_001951-3300032006-Ga0310344_1001423810
Arc-VirIMGVR_UViG_3300032006_001951-3300032006-Ga0310344_1001423810
Identity
- Kingdom:
- archaea
Quality
95.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-39
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pr7A00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.92 | 83.0 | 5.43e-01 | 100.0% | 26.3% |
| 1cqzA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.88 | 74.0 | 4.79e-01 | 100.0% | 22.8% |
| 1kolA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.85 | 74.0 | 4.73e-01 | 100.0% | 21.6% |
| 2b0cA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.78 | 67.0 | 4.52e-01 | 97.2% | 27.1% |
| 3wbkB03 | 3.40.50.10050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor IF- 2, domain 3 | 0.72 | 60.0 | 4.29e-01 | 100.0% | 34.8% |
| 4hn9A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.72 | 58.0 | 4.09e-01 | 100.0% | 33.8% |
| 3gl9A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 55.0 | 3.97e-01 | 100.0% | 34.2% |
| 2rb7A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.69 | 53.0 | 3.34e-01 | 100.0% | 34.0% |
| 3hb0D00 | 3.40.50.12350 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.68 | 55.0 | 3.37e-01 | 100.0% | 16.0% |
| 2ynmD03 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.68 | 53.0 | 3.53e-01 | 100.0% | 36.2% |
| 1l7eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 54.0 | 3.45e-01 | 91.7% | 42.4% |
| 1wu7A03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.68 | 54.0 | 4.01e-01 | 91.7% | 49.5% |
| 4xqcA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.67 | 53.0 | 3.51e-01 | 100.0% | 45.5% |
| 3jteA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 52.0 | 3.76e-01 | 100.0% | 29.4% |
| 3id6A01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.66 | 45.0 | 3.35e-01 | 72.2% | 24.5% |
| 1qwjB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.66 | 54.0 | 3.31e-01 | 94.4% | 20.1% |
| 3lufB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 52.0 | 3.78e-01 | 100.0% | 31.7% |
| 4qboA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.65 | 49.0 | 3.99e-01 | 100.0% | 50.0% |
| 2qxyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 50.0 | 3.73e-01 | 100.0% | 34.5% |
| 4wi1A03 | 3.30.110.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › C-terminal domain of ProRS | 0.65 | 48.0 | 3.94e-01 | 91.7% | 93.8% |
| 2jk1A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 49.0 | 3.55e-01 | 100.0% | 29.0% |
| 6ontA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 52.0 | 3.79e-01 | 100.0% | 33.9% |
| 3p9zA01 | 3.40.50.10090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 51.0 | 3.78e-01 | 91.7% | 38.8% |
| 6qrjA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 50.0 | 3.74e-01 | 100.0% | 34.8% |
| 1mb3A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 49.0 | 3.63e-01 | 100.0% | 36.8% |
| 7x0hC01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 51.0 | 3.54e-01 | 100.0% | 36.5% |
| 2pyyA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 48.0 | 3.65e-01 | 91.7% | 41.3% |
| 1jvnA01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.59 | 44.0 | 2.78e-01 | 91.7% | 16.2% |
| 6xh5B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 45.0 | 2.95e-01 | 100.0% | 45.7% |
| 3i6vA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 43.0 | 3.47e-01 | 91.7% | 45.2% |
| 3i3wA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.58 | 44.0 | 3.61e-01 | 94.4% | 50.0% |
| 3g3sA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 41.0 | 3.00e-01 | 88.9% | 51.1% |
| 2p0lA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 43.0 | 2.72e-01 | 100.0% | 84.6% |
| 3g9kF01 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.54 | 38.0 | 2.56e-01 | 86.1% | 17.2% |
| 2r4rA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 42.0 | 2.72e-01 | 100.0% | 49.5% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 41.0 | 2.80e-01 | 91.7% | 51.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3935264 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.93 | 82.0 | 4.94e-01 | 100.0% | 17.0% |
| 3971137 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.92 | 81.0 | 5.15e-01 | 100.0% | 22.5% |
| 3225179 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.91 | 80.0 | 4.80e-01 | 100.0% | 16.4% |
| 4936315 | 2007.1.3.37 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Mut7-C | 0.90 | 76.0 | 5.61e-01 | 94.4% | 44.4% |
| 3221270 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.89 | 76.0 | 4.65e-01 | 100.0% | 16.7% |
| 4349139 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.87 | 74.0 | 4.54e-01 | 100.0% | 17.1% |
| 4945183 | 3407.1.1.5 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.85 | 59.0 | 3.93e-01 | 72.2% | 20.0% |
| 4963568 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.84 | 75.0 | 5.69e-01 | 100.0% | 46.3% |
| 5046639 | 2007.1.14.19 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Mut7-C | 0.84 | 67.0 | 4.87e-01 | 94.4% | 37.1% |
| 4959133 | 2007.1.14.19 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Mut7-C | 0.84 | 69.0 | 4.48e-01 | 94.4% | 25.0% |
| 5027360 | 2006.1.4.54 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Mut7-C | 0.83 | 71.0 | 4.67e-01 | 97.2% | 28.6% |
| 4975926 | 2007.1.3.37 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Mut7-C | 0.82 | 66.0 | 5.07e-01 | 94.4% | 47.1% |
| 4934357 | 2007.1.3.37 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Mut7-C | 0.80 | 65.0 | 5.12e-01 | 100.0% | 45.9% |
| 5033548 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.79 | 63.0 | 4.11e-01 | 100.0% | 20.0% |
| 5036089 | 3407.1.1.2 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc | 0.78 | 54.0 | 3.65e-01 | 72.2% | 20.8% |
| 4312495 | 7512.1.1.9 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB | 0.76 | 62.0 | 3.96e-01 | 100.0% | 24.6% |
| 5033048 | 2007.1.14.19 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Mut7-C | 0.75 | 61.0 | 4.97e-01 | 94.4% | 54.3% |
| 3235833 | 11.1.5.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box | 0.75 | 63.0 | 3.98e-01 | 100.0% | 18.4% |
| 3931281 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.74 | 57.0 | 3.68e-01 | 100.0% | 17.4% |
| 4974488 | 7512.1.1.15 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf | 0.74 | 60.0 | 3.74e-01 | 94.4% | 16.1% |
| 4956372 | 2007.24.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › AtpF-like › AtpF-like | 0.73 | 63.0 | 4.79e-01 | 94.4% | 45.0% |
| 3927013 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.73 | 58.0 | 3.51e-01 | 94.4% | 13.2% |
| 141623 | 7516.1.1.11 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 | 0.72 | 60.0 | 3.60e-01 | 97.2% | 17.0% |
| 3995281 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.70 | 57.0 | 3.51e-01 | 100.0% | 16.3% |
| 3789055 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.69 | 57.0 | 3.73e-01 | 100.0% | 20.0% |
| 3742608 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.68 | 55.0 | 3.76e-01 | 100.0% | 24.0% |
| 2812944 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.65 | 52.0 | 3.22e-01 | 100.0% | 15.6% |
| 3270974 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.64 | 51.0 | 3.59e-01 | 100.0% | 28.6% |
| 3822419 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 42.0 | 2.49e-01 | 100.0% | 24.0% |