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IMGVR_UViG_3300032007_000207-3300032007-Ga0310695_1000254738

Arc-Vir

IMGVR_UViG_3300032007_000207-3300032007-Ga0310695_1000254738

Quality

78.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-136
PDB
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.72 63.0 6.16e-01 100.0% 86.5%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 37.0 3.86e-01 82.8% 57.8%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 44.0 4.50e-01 84.3% 72.4%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 40.0 4.04e-01 91.8% 66.4%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 4.29e-01 84.3% 72.7%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.60 43.0 4.20e-01 82.8% 68.8%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 4.08e-01 83.6% 66.2%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 4.13e-01 83.6% 72.9%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 38.0 3.95e-01 83.6% 71.5%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.58 42.0 4.05e-01 74.6% 84.5%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.57 40.0 4.03e-01 83.6% 71.9%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.98e-01 85.1% 68.0%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.13e-01 84.3% 76.5%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 37.0 3.88e-01 84.3% 74.2%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 3.91e-01 83.6% 76.8%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.92e-01 85.1% 71.2%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 4.02e-01 84.3% 75.7%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 39.0 3.37e-01 72.4% 57.3%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 4.16e-01 84.3% 73.6%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 35.0 3.68e-01 84.3% 70.8%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 42.0 4.06e-01 86.6% 71.6%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 39.0 3.82e-01 75.4% 77.6%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.71e-01 76.9% 68.1%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 46.0 4.60e-01 95.5% 92.7%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 30.0 3.15e-01 92.5% 59.7%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 43.0 3.76e-01 91.8% 79.8%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.51 38.0 3.19e-01 91.8% 44.9%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 26.0 3.23e-01 70.1% 78.6%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 31.0 3.34e-01 73.9% 71.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039841 330.1.1.36 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › ERF 0.90 69.0 7.56e-01 100.0% 95.5%
3959230 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.71 45.0 4.47e-01 79.9% 60.7%
4018556 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.70 63.0 5.93e-01 100.0% 81.2%
3177367 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.70 64.0 6.12e-01 99.3% 91.0%
3786132 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.68 62.0 6.06e-01 100.0% 91.0%
3581448 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 37.0 4.01e-01 70.1% 63.5%
3282685 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 41.0 4.37e-01 79.9% 71.7%
3284807 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 42.0 4.20e-01 82.8% 65.9%
2033779 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.61 42.0 4.31e-01 84.3% 73.2%
4419521 243.1.1.108 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_YvbJ 0.60 40.0 4.08e-01 70.9% 67.4%
3184149 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 39.0 3.95e-01 83.6% 64.4%
3255190 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 37.0 4.14e-01 73.1% 81.2%
3263321 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 42.0 4.08e-01 79.1% 66.9%
4032024 2.1.1.335 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29902 0.58 37.0 4.25e-01 94.8% 88.4%
3288819 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.58 44.0 4.25e-01 84.3% 70.7%
4927378 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 38.0 3.97e-01 83.6% 73.2%
3934854 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 41.0 3.94e-01 73.9% 67.3%
169507 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 36.0 3.92e-01 83.6% 76.8%
3808882 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.55 40.0 3.63e-01 74.6% 72.6%
3663072 1.1.1.28 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.53 39.0 2.81e-01 76.1% 99.5%
3387344 7503.1.1.4 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.53 47.0 4.60e-01 96.3% 94.5%
1070223 7503.1.1.4 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.53 46.0 4.60e-01 95.5% 92.7%
3968198 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.52 45.0 3.94e-01 94.0% 88.5%
3838060 7503.1.1.4 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.51 46.0 4.29e-01 98.5% 83.6%
D2 high residues 179-233
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.68 57.0 4.96e-01 92.7% 77.4%
6ifsB02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.65 56.0 5.11e-01 94.5% 100.0%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.65 53.0 4.60e-01 98.2% 67.4%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.64 50.0 4.15e-01 87.3% 70.6%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.64 44.0 3.22e-01 83.6% 27.1%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.52e-01 70.9% 77.6%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 3.43e-01 85.5% 92.4%
3nrtA00 6.20.350.10 Special › Other non-globular › Actin; Chain A, domain 4 › 0.58 46.0 3.87e-01 87.3% 66.7%
4nswB01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.58 41.0 2.71e-01 78.2% 61.7%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.57 40.0 3.61e-01 74.5% 60.3%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.57 43.0 4.13e-01 85.5% 75.8%
2cfoA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 39.0 3.92e-01 89.1% 75.9%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 40.0 3.29e-01 78.2% 60.8%
3qx3A04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.55 38.0 3.20e-01 74.5% 90.0%
2zxeA03 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 41.0 2.89e-01 81.8% 73.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 2.92e-01 72.7% 93.0%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 36.0 3.52e-01 70.9% 68.9%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 39.0 3.02e-01 87.3% 32.4%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.53 38.0 3.41e-01 78.2% 87.5%
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 35.0 3.58e-01 70.9% 77.4%
2ffjA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.51 42.0 4.07e-01 100.0% 81.5%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 3.18e-01 100.0% 53.8%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.51 39.0 3.02e-01 94.5% 61.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962468 101.1.2.925 alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.70 46.0 3.75e-01 83.6% 36.2%
3198528 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.68 45.0 4.59e-01 100.0% 69.1%
3239865 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.64 42.0 3.22e-01 74.5% 28.1%
3437796 101.1.11.136 alpha arrays › HTH › HTH › Ribbon-helix-helix › PF30992 0.63 40.0 4.21e-01 78.2% 72.0%
5051872 873.1.1.12 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.63 42.0 3.34e-01 70.9% 33.3%
3220755 10.12.1.97 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C 0.63 49.0 3.40e-01 85.5% 85.6%
4993069 632.12.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 0.62 52.0 5.03e-01 100.0% 93.7%
3472785 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.62 42.0 4.08e-01 74.5% 65.0%
3927046 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 41.0 4.13e-01 72.7% 69.1%
5072120 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.61 38.0 3.66e-01 96.4% 52.3%
3171100 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.60 41.0 3.47e-01 74.5% 52.0%
4403853 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.59 41.0 4.05e-01 83.6% 69.5%
3250611 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.59 40.0 3.71e-01 72.7% 94.7%
3557614 170.1.1.28 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF25914 0.59 43.0 4.28e-01 98.2% 76.7%
4940480 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 39.0 3.98e-01 70.9% 78.2%
4941976 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 47.0 3.91e-01 100.0% 69.1%
3255587 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 37.0 3.23e-01 70.9% 43.2%
3220510 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.56 33.0 3.50e-01 96.4% 66.0%
2786 101.1.4.6 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.54 42.0 3.81e-01 87.3% 65.4%
3728309 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.40e-01 72.7% 62.9%
3509166 101.1.1.244 alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS 0.53 35.0 3.31e-01 70.9% 54.3%
3466942 170.1.1.15 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.52 41.0 3.53e-01 96.4% 63.8%
3723867 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 44.0 2.81e-01 98.2% 20.3%
3437526 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.52 44.0 3.59e-01 100.0% 60.0%
3689931 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.51 42.0 4.05e-01 96.4% 80.0%
4046570 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.51 44.0 4.30e-01 98.2% 98.3%
3877252 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.50 32.0 2.91e-01 70.9% 45.0%