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IMGVR_UViG_3300032127_000424-3300032127-Ga0315305_10098473
Arc-VirIMGVR_UViG_3300032127_000424-3300032127-Ga0315305_10098473
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-79
Domain cluster:
rep: IMGVR_UViG_3300023175_003922-3300023175-Ga0255777_100146715__D5-76
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tw6A06 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 37.0 | 4.32e-01 | 72.0% | 81.5% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 42.0 | 4.32e-01 | 72.0% | 70.8% |
| 1h99A01 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.62 | 43.0 | 3.90e-01 | 72.0% | 94.2% |
| 3r7tA02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.61 | 37.0 | 3.50e-01 | 97.3% | 50.5% |
| 1h99A02 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.60 | 40.0 | 3.60e-01 | 94.7% | 48.1% |
| 1iqpA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.60 | 52.0 | 4.84e-01 | 100.0% | 77.7% |
| 1tafB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.60 | 35.0 | 3.64e-01 | 100.0% | 61.4% |
| 3ugjA02 | 1.10.8.750 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain | 0.60 | 44.0 | 4.74e-01 | 96.0% | 95.2% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.59 | 40.0 | 3.92e-01 | 72.0% | 64.2% |
| 3bhgA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.59 | 41.0 | 3.67e-01 | 74.7% | 73.9% |
| 1njgB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 46.0 | 4.64e-01 | 100.0% | 87.7% |
| 2q14B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.57 | 40.0 | 2.87e-01 | 73.3% | 27.5% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.57 | 47.0 | 3.82e-01 | 93.3% | 49.7% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 3.02e-01 | 77.3% | 99.5% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 47.0 | 3.88e-01 | 100.0% | 78.4% |
| 1oksA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 37.0 | 4.30e-01 | 94.7% | 100.0% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 36.0 | 4.09e-01 | 81.3% | 96.2% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.55 | 47.0 | 3.88e-01 | 98.7% | 53.4% |
| 2dt5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 4.14e-01 | 80.0% | 91.8% |
| 3r72A00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.54 | 46.0 | 4.01e-01 | 97.3% | 74.6% |
| 3e70C01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.54 | 46.0 | 4.33e-01 | 98.7% | 96.9% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 32.0 | 3.45e-01 | 88.0% | 69.7% |
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.52 | 34.0 | 3.29e-01 | 76.0% | 57.5% |
| 5h0pA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 43.0 | 3.99e-01 | 100.0% | 79.4% |
| 1jg1A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 43.0 | 3.11e-01 | 94.7% | 57.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3373467 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.76 | 52.0 | 4.62e-01 | 70.7% | 54.3% |
| 3248244 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.75 | 47.0 | 4.84e-01 | 100.0% | 67.1% |
| 3998578 | 142.1.1.41 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RabGAP-TBC | 0.71 | 48.0 | 5.10e-01 | 70.7% | 100.0% |
| 3478089 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.70 | 51.0 | 4.64e-01 | 76.0% | 81.8% |
| 5025683 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.67 | 46.0 | 5.23e-01 | 85.3% | 98.2% |
| 3494396 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.67 | 55.0 | 5.12e-01 | 100.0% | 71.6% |
| 3577210 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.63 | 45.0 | 3.82e-01 | 76.0% | 63.8% |
| 1225266 | 605.4.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › Rop | 0.63 | 35.0 | 3.33e-01 | 94.7% | 46.6% |
| 3439913 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.63 | 54.0 | 5.09e-01 | 98.7% | 78.9% |
| 4471800 | 148.1.3.237 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30483 | 0.63 | 44.0 | 4.43e-01 | 73.3% | 73.3% |
| 3657952 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.62 | 51.0 | 3.86e-01 | 94.7% | 78.5% |
| 3235613 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.62 | 54.0 | 3.61e-01 | 100.0% | 89.2% |
| 3573067 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.61 | 53.0 | 5.04e-01 | 100.0% | 82.2% |
| 5066119 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 46.0 | 3.01e-01 | 80.0% | 91.9% |
| 4407601 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.59 | 50.0 | 4.92e-01 | 97.3% | 91.3% |
| 4996069 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.58 | 33.0 | 3.16e-01 | 98.7% | 46.7% |
| 3506671 | 3938.1.1.1 ↗ | alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › hnRNP_Q_AcD | 0.57 | 44.0 | 4.38e-01 | 84.0% | 93.8% |
| 3495895 | 180.1.1.6 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › FIT | 0.56 | 49.0 | 3.52e-01 | 100.0% | 81.7% |
| 3597 | 632.3.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Paramyx_P_V_C | 0.55 | 37.0 | 4.30e-01 | 94.7% | 100.0% |
| 3038945 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.55 | 45.0 | 3.88e-01 | 93.3% | 66.9% |
| 3856673 | 396.1.1.8 ↗ | few secondary structure elements › CCHC-type 1 zinc finger › Retrovirus zinc finger-related domains › Retrovirus zinc finger-related domains › PNMA | 0.55 | 46.0 | 4.26e-01 | 100.0% | 79.0% |
| 3503129 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.54 | 45.0 | 4.33e-01 | 100.0% | 82.4% |
| 3701020 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.54 | 35.0 | 3.42e-01 | 93.3% | 61.3% |
| 3659411 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.54 | 36.0 | 3.15e-01 | 98.7% | 46.4% |
| 3253260 | 5069.1.3.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS | 0.53 | 39.0 | 3.50e-01 | 78.7% | 79.8% |
| 2627770 | 101.1.4.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou | 0.52 | 37.0 | 3.91e-01 | 92.0% | 83.8% |
| 5071381 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.52 | 33.0 | 3.00e-01 | 100.0% | 45.7% |
| 3328518 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.52 | 43.0 | 3.26e-01 | 92.0% | 49.7% |
| 3554752 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 40.0 | 4.25e-01 | 86.7% | 100.0% |
| 3725297 | 3755.4.1.45 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF30922 | 0.51 | 41.0 | 3.26e-01 | 86.7% | 68.7% |