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IMGVR_UViG_3300032820_001765-3300032820-Ga0310342_1000087047

Arc-Vir

IMGVR_UViG_3300032820_001765-3300032820-Ga0310342_1000087047

Identity

Kingdom:
archaea

Quality

88.5 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-74
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.76 50.0 5.22e-01 78.7% 74.5%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.60 45.0 4.53e-01 93.4% 80.6%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.57 49.0 4.44e-01 95.1% 74.7%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.56 48.0 3.74e-01 100.0% 57.7%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.51 39.0 3.66e-01 88.5% 95.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.48e-01 83.6% 71.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3392518 377.13.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › Primase zinc finger › Primase zinc finger 0.74 42.0 5.16e-01 72.1% 100.0%
5058383 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.73 52.0 5.73e-01 75.4% 100.0%
3494052 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 47.0 5.35e-01 86.9% 97.8%
4965229 377.1.1.133 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 0.66 46.0 5.09e-01 78.7% 90.0%
4154378 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.63 48.0 4.72e-01 82.0% 96.9%
3487873 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.62 44.0 4.46e-01 75.4% 80.0%
4938674 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 43.0 4.42e-01 80.3% 85.0%
3714738 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.56 44.0 3.65e-01 95.1% 45.8%
3611182 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.56 44.0 4.12e-01 95.1% 68.8%
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.56 48.0 3.71e-01 100.0% 57.7%
4882574 375.1.1.35 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_2753_ZBP 0.55 37.0 3.79e-01 85.2% 74.1%
3692289 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.54 43.0 3.20e-01 90.2% 66.9%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.53 36.0 3.60e-01 82.0% 67.7%
3649408 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.53 40.0 3.77e-01 85.2% 88.5%
D2 medium residues 75-206
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 55.8 3.90e-15 34.8% 95.7%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.67 50.0 5.59e-01 86.4% 96.2%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.64 54.0 5.07e-01 90.9% 89.5%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 34.0 3.42e-01 70.5% 62.4%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.50 31.0 3.34e-01 70.5% 71.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.64 52.0 5.57e-01 84.8% 99.1%
8233 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.64 54.0 5.07e-01 90.9% 89.5%
3810560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 23.0 3.02e-01 71.2% 55.7%
3539740 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.59 47.0 4.82e-01 81.8% 89.6%
3695527 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.59 48.0 4.98e-01 88.6% 95.0%
3197950 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.51 19.0 2.85e-01 73.5% 88.9%