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IMGVR_UViG_3300033141_000944-3300033141-Ga0366833_100713516
Arc-VirIMGVR_UViG_3300033141_000944-3300033141-Ga0366833_100713516
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 21-67_92-352
Domain cluster:
rep: IMGVR_UViG_3300032007_000207-3300032007-Ga0310695_100025474__D117-137_157-373
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3isrA02 | 2.60.40.2250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 17.0 | 2.96e-01 | 80.5% | 76.0% |
| 2ztbA02 | 2.60.40.4280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 18.0 | 2.96e-01 | 76.3% | 86.9% |
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 12.0 | 2.25e-01 | 72.1% | 63.2% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 20.0 | 3.16e-01 | 79.2% | 86.0% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 18.0 | 2.63e-01 | 77.9% | 64.6% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.50 | 11.0 | 2.51e-01 | 70.8% | 83.6% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2988313 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.70 | 57.0 | 6.09e-01 | 96.8% | 94.5% |
| 3513770 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.70 | 64.0 | 6.50e-01 | 99.0% | 98.3% |
| 4890673 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.67 | 62.0 | 5.94e-01 | 97.4% | 94.0% |
| 3501742 | 2485.3.1.21 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phi29_MCP | 0.64 | 59.0 | 5.96e-01 | 96.4% | 96.1% |
| 3110786 | 2485.3.1.14 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like | 0.64 | 59.0 | 5.72e-01 | 97.7% | 89.8% |
| 3090875 | 2485.3.1.14 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like | 0.63 | 58.0 | 5.87e-01 | 97.7% | 97.7% |
| 3514856 | 1181.1.1.0 ↗ | 0.54 | 15.0 | 3.20e-01 | 85.4% | 100.0% | |
| 3974305 | 10.20.1.2 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N | 0.53 | 19.0 | 2.94e-01 | 82.1% | 76.7% |
| 3702063 | 331.9.1.5 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf | 0.52 | 18.0 | 3.06e-01 | 90.3% | 86.2% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 15.0 | 2.68e-01 | 76.3% | 81.1% |
| 4949986 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.51 | 16.0 | 2.74e-01 | 72.4% | 79.1% |