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IMGVR_UViG_3300033141_005774-3300033141-Ga0366833_10675616

Arc-Vir

IMGVR_UViG_3300033141_005774-3300033141-Ga0366833_10675616

Quality

81.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-109
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.77 50.0 4.72e-01 91.5% 55.8%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 39.0 4.87e-01 84.0% 82.8%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.72 52.0 5.78e-01 91.5% 95.9%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 35.0 4.08e-01 84.0% 64.8%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 43.0 5.23e-01 92.6% 100.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 38.0 4.17e-01 95.7% 69.3%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 37.0 4.16e-01 93.6% 72.9%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 34.0 4.04e-01 95.7% 76.3%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 5.28e-01 100.0% 98.7%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 33.0 3.52e-01 83.0% 56.8%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 46.0 4.43e-01 77.7% 89.6%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 49.0 4.88e-01 91.5% 82.3%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 47.0 4.51e-01 81.9% 98.1%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 50.0 4.94e-01 96.8% 85.6%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.60 46.0 4.82e-01 96.8% 90.6%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 50.0 5.25e-01 96.8% 98.8%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.75e-01 97.9% 84.3%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 44.0 3.94e-01 81.9% 91.0%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.58 36.0 4.27e-01 89.4% 92.3%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 49.0 4.90e-01 96.8% 90.8%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 44.0 4.34e-01 84.0% 97.1%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 45.0 4.33e-01 87.2% 93.7%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 50.0 4.84e-01 97.9% 94.3%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 45.0 4.11e-01 87.2% 96.1%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.56 31.0 3.59e-01 84.0% 77.8%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 4.66e-01 100.0% 84.5%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 4.50e-01 92.6% 81.6%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 45.0 4.50e-01 87.2% 90.7%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 35.0 3.99e-01 70.2% 95.5%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.79e-01 74.5% 90.3%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 37.0 4.08e-01 73.4% 90.8%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 45.0 4.19e-01 97.9% 79.3%
1vwxk00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 35.0 3.89e-01 71.3% 95.7%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.50 36.0 3.58e-01 75.5% 84.3%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 35.0 3.27e-01 72.3% 76.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 32.0 3.54e-01 89.4% 83.1%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4446654 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 50.0 5.63e-01 95.7% 92.9%
3798917 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.73 46.0 5.59e-01 77.7% 100.0%
5044263 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 46.0 5.31e-01 98.9% 92.9%
4243492 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.68 34.0 4.25e-01 84.0% 76.7%
4935901 2.1.1.382 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28814 0.68 55.0 5.71e-01 100.0% 94.4%
4959991 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 48.0 5.39e-01 93.6% 100.0%
5009170 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 49.0 5.36e-01 100.0% 96.0%
4985735 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.66 52.0 5.24e-01 97.9% 84.2%
158849 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 45.0 4.11e-01 70.2% 78.3%
3838219 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 53.0 5.59e-01 95.7% 94.1%
4927437 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 46.0 5.21e-01 91.5% 98.6%
3588305 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 5.12e-01 96.8% 85.4%
5002173 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 55.0 5.66e-01 100.0% 97.8%
3960657 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 47.0 5.16e-01 96.8% 97.3%
3893735 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 46.0 4.38e-01 77.7% 93.9%
4606349 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 46.0 4.63e-01 91.5% 75.8%
3100772 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.63 42.0 4.35e-01 100.0% 74.4%
5035327 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 48.0 5.05e-01 95.7% 90.6%
4514268 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 47.0 4.87e-01 93.6% 84.3%
4943166 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.62 49.0 5.31e-01 95.7% 100.0%
4211951 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.62 44.0 4.72e-01 92.6% 87.5%
4953069 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.62 54.0 4.88e-01 97.9% 72.0%
4173773 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 48.0 5.04e-01 92.6% 91.7%
4213053 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 52.0 5.21e-01 100.0% 89.5%
4052975 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 52.0 4.93e-01 97.9% 80.0%
3738189 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.60 49.0 4.90e-01 89.4% 100.0%
3738365 2.1.1.128 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arb1 0.60 51.0 4.54e-01 96.8% 66.2%
4076804 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.60 31.0 3.90e-01 72.3% 85.5%
4993340 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 51.0 5.06e-01 97.9% 91.8%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 46.0 4.05e-01 81.9% 79.3%
4930470 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 47.0 4.92e-01 93.6% 92.9%
3963927 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 51.0 4.88e-01 100.0% 80.9%
5043498 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.59 49.0 3.19e-01 89.4% 37.2%
5029441 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.58 43.0 3.98e-01 77.7% 87.5%
3262159 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 46.0 4.15e-01 85.1% 82.3%
386 2.1.1.79 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecG_wedge 0.58 48.0 4.73e-01 97.9% 83.5%
3783181 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 45.0 4.30e-01 83.0% 94.5%
4087511 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 50.0 4.80e-01 100.0% 81.8%
3621216 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.58 42.0 3.79e-01 74.5% 86.4%
3392485 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 49.0 5.02e-01 100.0% 94.4%
3864474 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 44.0 3.69e-01 83.0% 60.6%
4145173 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 50.0 4.85e-01 100.0% 85.7%
4030120 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 2.48e-01 71.3% 15.8%
3798524 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.57 45.0 4.29e-01 87.2% 92.2%
5021659 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 49.0 5.01e-01 94.7% 98.9%
4590962 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.56 30.0 3.59e-01 73.4% 80.0%
4932452 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 4.81e-01 92.6% 93.7%
5069582 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 50.0 5.02e-01 100.0% 96.8%
5068809 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 50.0 3.78e-01 100.0% 49.3%
4968172 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 50.0 3.80e-01 100.0% 50.5%
4265586 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 48.0 4.35e-01 93.6% 95.2%
4515154 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.55 48.0 4.46e-01 93.6% 94.8%
3509606 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 43.0 3.38e-01 83.0% 80.0%
3276150 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.55 50.0 4.23e-01 100.0% 72.7%
5017342 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 47.0 4.16e-01 93.6% 88.1%
4951315 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 49.0 4.65e-01 100.0% 87.3%
5012544 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 48.0 4.63e-01 100.0% 88.6%
3606814 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 38.0 4.08e-01 73.4% 92.3%
4943785 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 48.0 4.24e-01 100.0% 74.3%
4318011 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 44.0 4.04e-01 90.4% 92.8%
3478003 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 49.0 4.65e-01 100.0% 96.4%
4946434 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.53 43.0 3.91e-01 89.4% 100.0%
3560835 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.53 47.0 3.19e-01 97.9% 83.2%
4959982 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.53 40.0 3.19e-01 83.0% 96.1%
4994226 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 43.0 3.97e-01 93.6% 97.6%
5056966 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.51 43.0 4.00e-01 91.5% 90.8%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 28.0 3.44e-01 100.0% 90.9%
3798208 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 46.0 4.32e-01 98.9% 90.4%