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IMGVR_UViG_3300033143_007987-3300033143-Ga0366829_10146552
Arc-VirIMGVR_UViG_3300033143_007987-3300033143-Ga0366829_10146552
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 29-82_100-121_171-250_352-386
Domain cluster:
rep: KC821618.1__AGO48403.1__Phi10-1_gp062__00062__D33-74_121-234_364-393
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.61 | 20.0 | 3.65e-01 | 83.2% | 100.0% |
| 1ts9A00 | 2.30.30.210 | Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 | 0.53 | 21.0 | 2.78e-01 | 86.4% | 64.3% |
| 2pqhB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 21.0 | 3.27e-01 | 90.1% | 100.0% |
| 6uy8A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 18.0 | 3.14e-01 | 82.2% | 100.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4985969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 20.0 | 3.51e-01 | 82.7% | 85.0% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.61 | 56.0 | 4.80e-01 | 94.2% | 88.6% |
| 4954546 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.61 | 55.0 | 4.63e-01 | 93.2% | 85.5% |
| 4676609 | 4038.1.1.10 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Portal_Mu | 0.60 | 57.0 | 4.75e-01 | 100.0% | 89.2% |
| 3964357 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.59 | 55.0 | 4.70e-01 | 97.9% | 88.3% |
| 5054738 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 19.0 | 3.34e-01 | 82.2% | 94.5% |
| 5033242 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.57 | 22.0 | 3.12e-01 | 85.9% | 72.9% |
| 5061066 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.56 | 20.0 | 2.95e-01 | 86.4% | 70.0% |
| 4947175 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.56 | 21.0 | 2.96e-01 | 85.9% | 67.8% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.56 | 53.0 | 4.58e-01 | 99.0% | 89.8% |
| 4943876 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.55 | 22.0 | 2.96e-01 | 86.4% | 67.4% |
| 4977702 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.55 | 22.0 | 3.07e-01 | 85.9% | 74.1% |
| 5065841 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.55 | 21.0 | 3.06e-01 | 85.9% | 75.0% |
| 5038850 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.55 | 21.0 | 2.93e-01 | 86.4% | 68.9% |
| 4253108 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.54 | 21.0 | 2.95e-01 | 86.4% | 70.5% |
| 3909399 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.54 | 22.0 | 3.29e-01 | 72.8% | 87.5% |
| 2557227 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.54 | 22.0 | 3.21e-01 | 86.4% | 87.0% |
| 5046193 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.53 | 21.0 | 2.94e-01 | 86.4% | 71.1% |
| 4885908 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.53 | 21.0 | 2.87e-01 | 86.4% | 67.3% |
| 5049139 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.53 | 23.0 | 3.03e-01 | 86.4% | 72.0% |
| 5042614 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 18.0 | 2.87e-01 | 82.2% | 82.9% |
| 3622645 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.51 | 21.0 | 2.80e-01 | 82.7% | 68.4% |
D2
medium
residues 83-99_122-170
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6wxrA01 | 1.10.640.10 | Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type | 0.81 | 58.0 | 3.42e-01 | 74.2% | 62.6% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.70 | 49.0 | 5.27e-01 | 72.7% | 90.6% |
| 2pe4A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.70 | 59.0 | 3.53e-01 | 90.9% | 19.4% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.69 | 57.0 | 4.43e-01 | 92.4% | 78.5% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 45.0 | 4.50e-01 | 72.7% | 64.7% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 57.0 | 3.61e-01 | 90.9% | 26.8% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 54.0 | 4.62e-01 | 84.8% | 59.4% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.67 | 58.0 | 4.54e-01 | 92.4% | 59.2% |
| 1kxpD01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.66 | 52.0 | 4.73e-01 | 89.4% | 64.0% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.66 | 46.0 | 4.39e-01 | 72.7% | 60.8% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.65 | 46.0 | 3.47e-01 | 74.2% | 96.9% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.65 | 46.0 | 4.40e-01 | 74.2% | 65.3% |
| 1n5uA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.63 | 53.0 | 4.51e-01 | 89.4% | 60.2% |
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.62 | 54.0 | 3.95e-01 | 97.0% | 95.5% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 41.0 | 3.84e-01 | 74.2% | 54.5% |
| 4s3mB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 39.0 | 3.39e-01 | 71.2% | 47.2% |
| 6ofuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 46.0 | 3.10e-01 | 89.4% | 22.8% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 46.0 | 3.30e-01 | 90.9% | 82.1% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 44.0 | 3.13e-01 | 89.4% | 63.3% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 42.0 | 3.21e-01 | 87.9% | 41.7% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 40.0 | 3.33e-01 | 77.3% | 65.8% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.53 | 39.0 | 3.26e-01 | 80.3% | 69.3% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 41.0 | 2.77e-01 | 89.4% | 23.3% |
| 1ihuA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.01e-01 | 97.0% | 38.0% |
| 4txiA03 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.51 | 35.0 | 3.08e-01 | 72.7% | 99.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3270646 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.79 | 56.0 | 3.75e-01 | 74.2% | 76.2% |
| 4980598 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.73 | 59.0 | 3.97e-01 | 84.8% | 33.6% |
| 3189160 | 101.1.2.527 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 | 0.73 | 53.0 | 4.53e-01 | 77.3% | 53.3% |
| 3503648 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.71 | 49.0 | 5.14e-01 | 72.7% | 80.0% |
| 5036318 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.71 | 56.0 | 3.87e-01 | 84.8% | 37.1% |
| 3398172 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.71 | 50.0 | 4.30e-01 | 74.2% | 49.5% |
| 4934293 | 4993.1.1.0 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit | 0.70 | 45.0 | 4.28e-01 | 78.8% | 55.0% |
| 4114339 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.70 | 60.0 | 4.43e-01 | 100.0% | 60.3% |
| 3848799 | 3755.2.1.4 ↗ | alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein › PF26143 | 0.67 | 52.0 | 4.07e-01 | 92.4% | 40.0% |
| 3174480 | 101.1.2.527 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 | 0.67 | 52.0 | 4.38e-01 | 83.3% | 59.1% |
| 3529736 | 3755.3.1.316 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ATRX_C | 0.67 | 51.0 | 4.05e-01 | 90.9% | 41.5% |
| 5077603 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.62 | 42.0 | 3.65e-01 | 71.2% | 82.9% |
| 3690556 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.60 | 45.0 | 4.72e-01 | 81.8% | 95.0% |
| 4025053 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.57 | 42.0 | 3.76e-01 | 78.8% | 63.2% |
| 3408346 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.57 | 42.0 | 4.13e-01 | 81.8% | 77.3% |
| 4523250 | 108.1.1.74 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7+EF-hand_8 | 0.57 | 44.0 | 4.02e-01 | 86.4% | 82.2% |
| 3700148 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.55 | 48.0 | 2.73e-01 | 100.0% | 31.5% |
| 3350634 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.54 | 41.0 | 2.93e-01 | 92.4% | 91.5% |
| 3781604 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.53 | 36.0 | 3.09e-01 | 71.2% | 60.0% |
| 3596843 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 41.0 | 3.78e-01 | 90.9% | 78.9% |
| 3400775 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 41.0 | 3.55e-01 | 98.5% | 97.6% |