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IMGVR_UViG_3300033144_008177-3300033144-Ga0366838_100040523

Arc-Vir

IMGVR_UViG_3300033144_008177-3300033144-Ga0366838_100040523

Quality

50.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 98-174
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13280.13 best WYL 29.4 8.80e-07 98.7% 91.4%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.42e-01 96.1% 77.5%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.38e-01 96.1% 76.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 46.0 5.43e-01 92.2% 94.2%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.27e-01 97.4% 77.5%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.52e-01 100.0% 78.8%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.71 53.0 5.72e-01 92.2% 98.4%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 41.0 4.58e-01 77.9% 77.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.10e-01 100.0% 72.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.28e-01 100.0% 98.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.01e-01 88.3% 82.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.35e-01 97.4% 94.4%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 57.0 4.58e-01 97.4% 54.8%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 59.0 4.64e-01 100.0% 58.3%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 58.0 4.63e-01 100.0% 82.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.99e-01 98.7% 92.3%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 57.0 4.03e-01 100.0% 36.8%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.97e-01 87.0% 87.8%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 56.0 4.49e-01 100.0% 73.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 5.23e-01 100.0% 98.6%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 5.05e-01 87.0% 100.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 5.04e-01 85.7% 97.1%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 53.0 4.36e-01 98.7% 75.9%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 51.0 4.03e-01 100.0% 49.1%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 52.0 4.47e-01 100.0% 70.9%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 52.0 4.27e-01 98.7% 75.9%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 51.0 4.38e-01 97.4% 75.2%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.62e-01 98.7% 84.5%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 45.0 3.63e-01 85.7% 92.1%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.57 51.0 4.17e-01 100.0% 88.7%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 49.0 3.64e-01 100.0% 40.0%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.34e-01 94.8% 82.9%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 4.27e-01 93.5% 92.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.34e-01 90.9% 83.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.44e-01 88.3% 95.5%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.64e-01 88.3% 77.9%
2c2iA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 45.0 3.62e-01 90.9% 98.7%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 42.0 3.52e-01 85.7% 93.4%
5a4eC00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 48.0 3.25e-01 97.4% 33.8%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.53 47.0 4.10e-01 98.7% 79.3%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 3.79e-01 76.6% 80.6%
3mwcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 41.0 3.49e-01 87.0% 94.1%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.52 44.0 3.94e-01 100.0% 66.1%
1q6wG00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.48e-01 90.9% 96.6%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.83e-01 96.1% 100.0%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.67e-01 100.0% 69.1%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 4.04e-01 80.5% 98.4%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.33e-01 94.8% 77.1%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.96 82.0 7.53e-01 100.0% 71.6%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.95 80.0 7.73e-01 100.0% 80.0%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.84 63.0 6.84e-01 97.4% 93.8%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 68.0 6.41e-01 100.0% 74.4%
3629536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 59.0 5.52e-01 100.0% 64.2%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 56.0 6.23e-01 100.0% 96.7%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.78 72.0 6.55e-01 100.0% 78.0%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 55.0 4.75e-01 100.0% 49.2%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.76 52.0 5.95e-01 97.4% 100.0%
3507146 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 58.0 5.59e-01 100.0% 74.1%
4152374 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 68.0 6.63e-01 100.0% 90.5%
3736411 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.71 61.0 5.95e-01 100.0% 85.9%
4049824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 54.0 4.73e-01 100.0% 56.5%
3434623 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 60.0 4.40e-01 100.0% 48.8%
3626927 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 39.0 4.44e-01 84.4% 80.0%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.66 59.0 5.53e-01 98.7% 86.3%
3530890 2004.1.1.402 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT 0.66 59.0 5.66e-01 100.0% 95.5%
3992087 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.65 59.0 4.53e-01 100.0% 51.8%
3629455 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.65 59.0 4.39e-01 100.0% 61.6%
3486189 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 48.0 5.27e-01 90.9% 100.0%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 49.0 5.28e-01 88.3% 98.4%
3828823 3324.1.1.2 extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.65 57.0 3.97e-01 100.0% 41.1%
4501781 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.27e-01 100.0% 94.0%
3612182 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.34e-01 96.1% 100.0%
3670468 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.64 57.0 4.83e-01 100.0% 63.8%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.64 55.0 5.64e-01 97.4% 97.3%
3474075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.87e-01 85.7% 83.8%
3413037 219.1.1.94 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ACTMAP-like_C 0.63 56.0 4.01e-01 100.0% 49.8%
4517543 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 56.0 4.76e-01 100.0% 76.8%
4029199 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 56.0 3.19e-01 100.0% 9.2%
4928794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.59e-01 71.4% 100.0%
3866907 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 54.0 5.31e-01 100.0% 94.1%
3917464 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.08e-01 93.5% 96.9%
3770804 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.24e-01 100.0% 94.1%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.07e-01 98.7% 98.5%
4629131 9.29.1.1 beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK 0.62 53.0 4.62e-01 100.0% 94.3%
3263955 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 49.0 4.17e-01 88.3% 74.4%
3670066 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.61 55.0 4.36e-01 100.0% 52.3%
3773104 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.54e-01 100.0% 79.3%
3782416 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 47.0 2.99e-01 84.4% 20.7%
4943576 4.23.1.0 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.61 53.0 4.59e-01 100.0% 68.8%
3974565 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.60 37.0 3.98e-01 85.7% 72.3%
3586651 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 48.0 4.64e-01 85.7% 77.6%
3538030 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 47.0 4.91e-01 98.7% 94.3%
3570230 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 48.0 4.58e-01 96.1% 74.4%
3213828 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 47.0 4.20e-01 85.7% 60.0%
7380 219.1.1.34 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.59 51.0 4.03e-01 100.0% 49.1%
3912726 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 46.0 4.77e-01 85.7% 91.4%
4932514 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 51.0 4.50e-01 100.0% 75.0%
4215369 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 52.0 4.47e-01 100.0% 74.4%
5036729 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 51.0 4.49e-01 100.0% 72.5%
3482677 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.76e-01 87.0% 92.9%
3398379 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 47.0 4.08e-01 88.3% 80.8%
1717442 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 47.0 4.41e-01 88.3% 71.3%
3914462 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 46.0 4.42e-01 92.2% 73.3%
3473981 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.58 52.0 4.43e-01 100.0% 72.8%
4530545 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.58 47.0 4.48e-01 92.2% 92.6%
4021801 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 51.0 3.37e-01 100.0% 34.2%
3918564 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 44.0 4.50e-01 81.8% 84.0%
4016655 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.57 51.0 3.32e-01 100.0% 34.5%
3704634 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 47.0 3.26e-01 92.2% 48.7%
3171604 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 46.0 4.69e-01 90.9% 92.0%
3937006 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.67e-01 90.9% 93.6%
1824182 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 43.0 4.34e-01 90.9% 83.1%
3594081 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.45e-01 89.6% 97.5%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.55 39.0 3.72e-01 90.9% 62.1%
4147907 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.55 48.0 3.96e-01 98.7% 100.0%
4012542 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 43.0 2.87e-01 87.0% 32.1%
4283621 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 46.0 4.29e-01 96.1% 89.7%
3605323 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 44.0 2.74e-01 89.6% 26.3%
3956586 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.53 41.0 3.01e-01 100.0% 27.9%
3659037 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 46.0 2.95e-01 97.4% 27.9%
3936663 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 45.0 3.91e-01 100.0% 99.2%
4960051 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 44.0 3.37e-01 92.2% 53.4%
3580912 220.1.1.158 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.52 41.0 3.39e-01 88.3% 63.3%
3646145 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 45.0 2.86e-01 96.1% 23.1%
4673289 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 45.0 3.48e-01 97.4% 92.0%
3211944 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.51 45.0 2.95e-01 98.7% 24.0%
3286458 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 46.0 3.91e-01 100.0% 93.6%
4636051 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.51 43.0 4.00e-01 100.0% 90.5%
3217506 9.1.1.50 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.51 44.0 3.86e-01 97.4% 95.8%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.51 38.0 3.45e-01 79.2% 75.2%
3939715 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 44.0 2.91e-01 97.4% 27.8%
3729254 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 44.0 2.80e-01 97.4% 23.4%
D2 medium residues 320-511
PDB
D3 medium residues 512-628
PDB