←Back to structures

IMGVR_UViG_3300033144_009016-3300033144-Ga0366838_100087126

Arc-Vir

IMGVR_UViG_3300033144_009016-3300033144-Ga0366838_100087126

Identity

Kingdom:
archaea

Quality

50.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 4.16e-01 100.0% 73.6%
2mjfB00 1.20.1440.260 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.62 52.0 4.51e-01 100.0% 61.1%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.02e-01 100.0% 77.0%
1tmxB00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.60 44.0 2.88e-01 98.2% 16.4%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.58 48.0 4.41e-01 100.0% 75.3%
4r3aA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 3.35e-01 100.0% 30.1%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.57 47.0 3.25e-01 100.0% 34.2%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 37.0 3.82e-01 85.7% 73.6%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.55 45.0 3.93e-01 94.6% 87.9%
1q8kA03 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.54 42.0 3.59e-01 100.0% 55.2%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.53 42.0 3.16e-01 92.9% 94.3%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.53 42.0 3.19e-01 91.1% 95.2%
3kzwA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 42.0 3.21e-01 98.2% 90.5%
1mpgA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.52 43.0 3.45e-01 100.0% 45.8%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.28e-01 96.4% 73.8%
3c6cA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 2.77e-01 100.0% 96.3%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.32e-01 91.1% 100.0%
3f6tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 39.0 2.85e-01 83.9% 66.9%
3pamB00 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.50 41.0 2.78e-01 100.0% 94.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3199964 1065.1.1.0 ↗ alpha bundles › SPX domain › SPX domain › SPX domain 0.61 48.0 3.39e-01 96.4% 26.3%
3278207 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 51.0 3.76e-01 100.0% 66.3%
3960345 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.59 46.0 3.55e-01 92.9% 37.0%
4132207 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.57 48.0 3.69e-01 100.0% 83.4%
3658365 3543.1.1.4 ↗ alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.57 46.0 3.05e-01 100.0% 76.1%
3970671 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 42.0 3.90e-01 85.7% 74.7%
3633412 206.1.1.34 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase_fungal 0.55 44.0 3.06e-01 100.0% 87.9%
4957734 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 44.0 3.48e-01 100.0% 84.8%
5024808 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.54 45.0 3.42e-01 98.2% 88.3%
3877278 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.53 42.0 2.76e-01 94.6% 73.7%
4029381 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.05e-01 100.0% 31.1%
4940184 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.24e-01 100.0% 53.8%
3772334 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.50 40.0 2.66e-01 100.0% 19.3%
D2 high residues 499-575
PDB
D3 medium residues 70-108_123-182_366-403_425-475
PDB
D4 medium residues 197-292
PDB
D5 medium residues 293-365
PDB
D6 medium residues 717-818
PDB