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IMGVR_UViG_3300033144_009016-3300033144-Ga0366838_10008715

Arc-Vir

IMGVR_UViG_3300033144_009016-3300033144-Ga0366838_10008715

Identity

Kingdom:
archaea

Quality

79.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-168
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.73 34.0 4.23e-01 78.4% 69.4%
3kq4B04 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.70 36.0 4.20e-01 83.7% 68.5%
4madA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 36.0 3.81e-01 87.6% 58.2%
3kq4B02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.65 36.0 4.02e-01 83.7% 68.6%
3zn6A01 2.60.120.1170 Mainly Beta › Sandwich › Jelly Rolls › 0.62 39.0 4.16e-01 83.7% 71.6%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 35.0 3.81e-01 86.3% 68.2%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.59 38.0 3.80e-01 88.2% 61.8%
4d7yA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 38.0 4.11e-01 85.6% 78.6%
3gbwA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.56 37.0 3.67e-01 87.6% 62.7%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.56 33.0 3.82e-01 87.6% 80.9%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 29.0 3.38e-01 83.7% 70.6%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 29.0 3.60e-01 81.0% 84.3%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 30.0 3.63e-01 82.4% 82.2%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 3.61e-01 90.2% 62.5%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 36.0 3.77e-01 86.3% 76.3%
6b6lA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 29.0 3.38e-01 85.6% 73.4%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 3.29e-01 88.2% 51.2%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 32.0 3.19e-01 86.9% 57.3%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 41.0 3.29e-01 86.3% 82.4%
3zn4A00 2.60.120.1180 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.86e-01 81.0% 78.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3764626 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.65 35.0 3.96e-01 88.2% 67.8%
4101890 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.65 38.0 4.09e-01 87.6% 65.9%
3485793 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.62 41.0 4.18e-01 94.1% 68.0%
3414663 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.62 35.0 3.85e-01 83.7% 67.2%
3789701 10.40.1.0 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain 0.60 38.0 3.86e-01 88.2% 62.6%
3580968 10.40.1.1 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.59 39.0 3.87e-01 87.6% 61.8%
4960627 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 35.0 4.00e-01 83.7% 77.4%
3408307 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 37.0 3.89e-01 88.2% 70.0%
3912745 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.57 37.0 4.17e-01 88.2% 85.2%
3577655 10.40.1.1 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.56 37.0 3.73e-01 88.2% 65.2%
3249076 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.73e-01 88.2% 70.3%
3587132 10.32.1.166 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Bac_rhamnosid-like_N 0.53 32.0 3.38e-01 86.9% 65.0%
5069324 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 36.0 3.79e-01 87.6% 77.0%
3751376 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.53 39.0 3.95e-01 86.3% 75.5%
3927998 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.53 34.0 3.95e-01 74.5% 90.9%
3926224 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.53 35.0 3.96e-01 77.1% 89.6%
3892774 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.52 37.0 3.96e-01 76.5% 84.6%
3866213 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.52 38.0 3.89e-01 86.3% 77.3%
3707025 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 40.0 4.00e-01 93.5% 78.7%
3926073 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 38.0 3.85e-01 79.7% 77.4%
3231215 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 37.0 4.03e-01 86.9% 91.2%
3585284 10.40.1.1 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.50 37.0 3.46e-01 88.2% 61.6%