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IMGVR_UViG_3300033148_001868-3300033148-Ga0366832_10567686

Arc-Vir

IMGVR_UViG_3300033148_001868-3300033148-Ga0366832_10567686

Identity

Kingdom:
archaea

Quality

88.3 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-57
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.75 53.0 5.38e-01 74.5% 76.4%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.67 47.0 4.57e-01 74.5% 69.4%
1vx2d00 4.10.830.10 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal Protein S14/S29 0.67 46.0 4.71e-01 78.2% 73.1%
2uzgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 56.0 4.76e-01 100.0% 62.1%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 52.0 4.22e-01 94.5% 56.0%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 33.0 2.41e-01 100.0% 19.7%
5fb0C01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 42.0 4.09e-01 85.5% 82.0%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 40.0 3.81e-01 87.3% 98.5%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.50 37.0 2.83e-01 83.6% 81.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4355340 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 57.0 5.75e-01 72.7% 98.2%
5049537 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 75.0 6.16e-01 100.0% 68.1%
5032367 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.80 70.0 5.66e-01 96.4% 53.0%
3397473 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 66.0 5.18e-01 100.0% 60.8%
5081423 378.1.1.3 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 0.75 62.0 5.61e-01 90.9% 71.6%
3271906 377.1.1.4 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.72 51.0 5.04e-01 78.2% 69.5%
3209207 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 60.0 4.27e-01 92.7% 82.1%
3582405 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 49.0 4.59e-01 72.7% 57.1%
4968430 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 43.0 4.35e-01 74.5% 69.1%
3226581 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.65 45.0 4.45e-01 74.5% 75.0%
4046934 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.64 45.0 4.87e-01 74.5% 93.3%
4882574 375.1.1.35 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_2753_ZBP 0.57 40.0 4.00e-01 74.5% 93.1%
2589 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 33.0 2.52e-01 98.2% 23.6%
4996140 304.39.1.1 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.51 36.0 3.01e-01 78.2% 46.4%
3271747 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.51 37.0 2.91e-01 80.0% 79.2%
D2 medium residues 68-122
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ykdB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 46.0 3.24e-01 96.4% 80.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4314985 377.1.1.15 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG 0.76 53.0 5.93e-01 72.7% 93.0%
3622162 192.2.1.34 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › CpG_bind_C 0.71 61.0 4.13e-01 96.4% 53.0%
3854364 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.69 61.0 3.56e-01 96.4% 88.9%
4515316 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.62 51.0 3.80e-01 89.1% 39.1%
3205677 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.62 46.0 2.91e-01 80.0% 63.3%
3205914 377.9.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › YL1_C 0.61 41.0 4.20e-01 70.9% 92.7%
4246382 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.61 47.0 3.58e-01 85.5% 46.2%
4381129 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.58 47.0 3.52e-01 89.1% 93.5%