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IMGVR_UViG_3300033148_002991-3300033148-Ga0366832_10852933

Arc-Vir

IMGVR_UViG_3300033148_002991-3300033148-Ga0366832_10852933

Identity

Kingdom:
archaea

Quality

81.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: rep: PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00269__D4-57_143-153
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 50.0 4.69e-01 82.9% 59.1%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.69 43.0 4.38e-01 90.0% 62.9%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.67 49.0 5.21e-01 91.4% 88.7%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 38.0 4.02e-01 72.9% 63.9%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 39.0 3.99e-01 74.3% 65.7%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.62 48.0 4.74e-01 85.7% 81.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 53.0 4.14e-01 95.7% 52.1%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 46.0 4.12e-01 88.6% 92.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 37.0 3.84e-01 72.9% 68.2%
3cxbA02 3.30.390.70 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein 0.57 36.0 3.20e-01 77.1% 42.5%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 47.0 4.04e-01 94.3% 93.2%
3vxvA00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.55 36.0 3.69e-01 74.3% 72.3%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.55 48.0 4.33e-01 98.6% 93.8%
2glxA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 47.0 3.31e-01 95.7% 78.2%
2j01100 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.53 39.0 3.70e-01 82.9% 100.0%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.52 44.0 3.59e-01 100.0% 78.4%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.52 43.0 3.36e-01 88.6% 73.4%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 2.80e-01 92.9% 73.2%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.65e-01 72.9% 90.4%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.52 38.0 3.23e-01 78.6% 88.6%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 3.64e-01 91.4% 79.6%
7z67A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.00e-01 92.9% 82.1%
2b9sA02 1.10.10.41 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 0.50 35.0 3.37e-01 92.9% 60.9%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.50 45.0 3.25e-01 100.0% 40.7%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3435613 3014.1.1.3 ↗ alpha duplicates or obligate multimers › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › DUF1677 0.78 65.0 6.77e-01 90.0% 100.0%
3450949 4207.1.2.63 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › DUF1677 0.76 64.0 5.62e-01 91.4% 67.0%
3666975 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.74 50.0 4.70e-01 75.7% 57.6%
3430765 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.74 52.0 4.55e-01 77.1% 51.0%
3692487 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.73 51.0 4.50e-01 74.3% 51.0%
3431026 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.72 50.0 4.54e-01 78.6% 53.7%
3657469 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 55.0 4.91e-01 85.7% 58.0%
3782681 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 53.0 4.60e-01 87.1% 50.9%
3715795 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 56.0 4.88e-01 85.7% 57.1%
4019898 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.70 54.0 4.86e-01 85.7% 59.0%
3833660 377.1.1.47 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT 0.70 47.0 4.90e-01 70.0% 86.2%
3255227 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.69 50.0 4.51e-01 78.6% 55.8%
3947959 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 51.0 4.52e-01 78.6% 58.0%
3281755 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.68 40.0 4.24e-01 78.6% 66.7%
3342185 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.66 50.0 4.56e-01 81.4% 62.1%
3705580 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.66 49.0 2.99e-01 82.9% 13.3%
3919467 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.64 41.0 4.70e-01 80.0% 100.0%
3732468 7575.1.1.11 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 0.60 52.0 3.50e-01 100.0% 64.1%
4993731 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.58 46.0 4.07e-01 100.0% 58.1%
3942738 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.58 49.0 3.74e-01 91.4% 70.3%
3508714 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.58 48.0 3.66e-01 91.4% 68.8%
3699952 101.1.2.120 ↗ alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.57 42.0 3.52e-01 80.0% 84.6%
3596115 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 3.64e-01 82.9% 84.8%
185329 636.1.1.2 ↗ alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › Sif 0.57 35.0 2.56e-01 80.0% 21.8%
3940247 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.57 43.0 3.72e-01 85.7% 51.7%
3410743 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.56 46.0 4.06e-01 94.3% 63.6%
None — 0.54 41.0 3.42e-01 84.3% 60.7%
3980806 636.1.1.2 ↗ alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › Sif 0.54 44.0 3.27e-01 90.0% 52.2%
3584039 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.53 45.0 2.87e-01 97.1% 37.0%
3591480 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 42.0 2.91e-01 88.6% 45.0%
3933947 5001.1.1.206 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg, 7TM_GPCR_Srv 0.53 41.0 2.56e-01 90.0% 38.4%
3507395 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.52 33.0 3.21e-01 75.7% 56.2%
1094905 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.51 37.0 3.71e-01 77.1% 91.4%
5011086 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 47.0 4.29e-01 98.6% 77.8%
5036086 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.16e-01 91.4% 82.5%
3281438 2005.1.1.95 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF28097 0.51 40.0 2.64e-01 84.3% 95.9%
3622454 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 44.0 2.75e-01 100.0% 33.6%
3925375 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 44.0 2.96e-01 100.0% 50.8%