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IMGVR_UViG_3300033149_003049-3300033149-Ga0366834_100378111
Arc-VirIMGVR_UViG_3300033149_003049-3300033149-Ga0366834_100378111
Identity
- Kingdom:
- archaea
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-99
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.74 | 46.0 | 4.69e-01 | 79.2% | 63.9% |
| 1e1hB01 | 1.20.58.540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 40.0 | 3.51e-01 | 93.1% | 41.7% |
| 1d0xA04 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.66 | 45.0 | 3.60e-01 | 70.8% | 42.3% |
| 6ks6A02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.66 | 55.0 | 4.83e-01 | 93.1% | 84.3% |
| 2l2oA00 | 1.10.10.1540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain | 0.64 | 48.0 | 4.65e-01 | 83.3% | 95.3% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.62 | 52.0 | 4.72e-01 | 93.1% | 69.1% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.61 | 45.0 | 4.20e-01 | 79.2% | 70.0% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 45.0 | 3.39e-01 | 80.6% | 35.4% |
| 1qoyA00 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.59 | 51.0 | 3.32e-01 | 94.4% | 94.4% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 52.0 | 4.26e-01 | 100.0% | 65.7% |
| 3pfmA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.58 | 46.0 | 3.26e-01 | 88.9% | 30.9% |
| 4o7iA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.57 | 48.0 | 3.64e-01 | 95.8% | 85.7% |
| 1wfxA01 | 1.10.10.970 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain | 0.57 | 42.0 | 4.23e-01 | 80.6% | 88.7% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 44.0 | 3.71e-01 | 80.6% | 51.3% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 49.0 | 3.97e-01 | 95.8% | 63.0% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 38.0 | 4.08e-01 | 80.6% | 83.3% |
| 3fzqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.55 | 38.0 | 3.32e-01 | 72.2% | 99.1% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.86e-01 | 86.1% | 76.2% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 3.46e-01 | 87.5% | 57.0% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 48.0 | 3.99e-01 | 95.8% | 72.6% |
| 2lpbA00 | 1.10.287.2920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 38.0 | 3.72e-01 | 86.1% | 65.4% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.58e-01 | 80.6% | 76.1% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 3.47e-01 | 88.9% | 47.8% |
| 3vwdA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 46.0 | 3.43e-01 | 100.0% | 80.6% |
| 3b73B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 3.95e-01 | 88.9% | 71.9% |
| 4yifF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.49e-01 | 87.5% | 50.0% |
| 3sigA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 41.0 | 2.86e-01 | 88.9% | 23.8% |
| 1zxjA01 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.52 | 41.0 | 3.10e-01 | 86.1% | 44.3% |
| 2fxaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.27e-01 | 88.9% | 43.6% |
| 4l80D00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.51 | 44.0 | 2.80e-01 | 94.4% | 22.1% |
| 2rd9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.50 | 44.0 | 3.36e-01 | 100.0% | 90.9% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4410759 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.69 | 49.0 | 4.12e-01 | 73.6% | 59.1% |
| 3876932 | 592.3.1.8 ↗ | alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › PF31020 | 0.69 | 59.0 | 5.22e-01 | 94.4% | 74.3% |
| 3718200 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 48.0 | 3.97e-01 | 73.6% | 59.2% |
| 5060418 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.68 | 48.0 | 3.97e-01 | 73.6% | 56.7% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.67 | 52.0 | 5.15e-01 | 88.9% | 80.0% |
| 4928071 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.65 | 49.0 | 3.19e-01 | 80.6% | 34.5% |
| 3606955 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 40.0 | 4.64e-01 | 77.8% | 90.0% |
| 3451928 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.65 | 54.0 | 2.96e-01 | 95.8% | 7.6% |
| 3498627 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.64 | 43.0 | 2.90e-01 | 81.9% | 19.2% |
| 5047150 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.64 | 49.0 | 3.48e-01 | 84.7% | 29.0% |
| 3746278 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.63 | 54.0 | 2.87e-01 | 100.0% | 6.9% |
| 3611776 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 49.0 | 3.96e-01 | 84.7% | 77.1% |
| 5017776 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.63 | 51.0 | 3.53e-01 | 88.9% | 36.4% |
| 3600122 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.62 | 43.0 | 3.31e-01 | 70.8% | 42.7% |
| 3441050 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.62 | 46.0 | 4.79e-01 | 79.2% | 100.0% |
| 5044634 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 47.0 | 3.92e-01 | 83.3% | 45.7% |
| 4985324 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.61 | 53.0 | 4.14e-01 | 97.2% | 58.1% |
| 3846614 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.60 | 52.0 | 2.81e-01 | 100.0% | 4.8% |
| 1687145 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 44.0 | 4.04e-01 | 80.6% | 79.6% |
| 4365970 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.59 | 47.0 | 4.23e-01 | 93.1% | 66.4% |
| 1916673 | 3758.1.1.2 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › HlyE | 0.59 | 51.0 | 3.32e-01 | 94.4% | 94.4% |
| 4016908 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 3.60e-01 | 87.5% | 47.3% |
| 3594687 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.56 | 49.0 | 3.58e-01 | 98.6% | 69.5% |
| 4533583 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 42.0 | 3.64e-01 | 80.6% | 73.0% |
| 4992317 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 3.98e-01 | 98.6% | 81.6% |
| 5051450 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.56 | 49.0 | 3.48e-01 | 95.8% | 87.8% |
| 4000134 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.55 | 48.0 | 2.72e-01 | 100.0% | 9.0% |
| 3943344 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.54 | 43.0 | 3.58e-01 | 90.3% | 63.6% |
| 5023102 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.54 | 42.0 | 3.68e-01 | 88.9% | 55.5% |
| 5010519 | 101.1.2.210 ↗ | alpha arrays › HTH › HTH › winged helix domain › CggR_N | 0.54 | 43.0 | 3.98e-01 | 88.9% | 73.7% |
| 3290858 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 3.78e-01 | 86.1% | 81.9% |
| 3717247 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.54 | 41.0 | 2.93e-01 | 81.9% | 31.4% |
| 3614292 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.53 | 47.0 | 3.61e-01 | 100.0% | 84.7% |
| 4999991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.70e-01 | 93.1% | 98.3% |
| 3731212 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.53 | 45.0 | 4.28e-01 | 91.7% | 84.7% |
| 3182031 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 3.01e-01 | 94.4% | 41.8% |
| 4965087 | 101.1.2.909 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF5797 | 0.52 | 41.0 | 4.15e-01 | 88.9% | 88.6% |
| 3916642 | 192.2.1.56 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 | 0.52 | 43.0 | 3.38e-01 | 90.3% | 50.0% |
| 3173752 | 2002.1.1.192 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase | 0.52 | 43.0 | 2.53e-01 | 91.7% | 77.8% |
| 4210079 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.86e-01 | 88.9% | 84.7% |
| 1511065 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.51 | 42.0 | 3.74e-01 | 93.1% | 68.5% |
| 3245774 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.51 | 45.0 | 2.86e-01 | 100.0% | 23.0% |
| 5056734 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.61e-01 | 93.1% | 66.1% |
| 4944605 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.51 | 45.0 | 3.18e-01 | 97.2% | 35.3% |
| 3692895 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.51 | 43.0 | 3.10e-01 | 100.0% | 76.5% |
| 3775826 | 4016.1.1.0 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase | 0.50 | 44.0 | 3.52e-01 | 97.2% | 96.6% |
| 5069502 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.61e-01 | 87.5% | 66.3% |
| 5070038 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.66e-01 | 90.3% | 78.0% |