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IMGVR_UViG_3300033153_002325-3300033153-Ga0366824_10251409
Arc-VirIMGVR_UViG_3300033153_002325-3300033153-Ga0366824_10251409
Identity
- Kingdom:
- archaea
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-57
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yzcA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.68 | 59.0 | 3.76e-01 | 100.0% | 28.2% |
| 1zq3P00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 40.0 | 3.75e-01 | 96.4% | 51.5% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 45.0 | 4.25e-01 | 83.6% | 64.2% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 41.0 | 4.22e-01 | 70.9% | 90.7% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 43.0 | 4.30e-01 | 92.7% | 73.7% |
| 1nvpD01 | 1.10.287.190 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription factor IIA gamma subunit, alpha-helical domain | 0.61 | 42.0 | 4.36e-01 | 100.0% | 80.4% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 43.0 | 4.09e-01 | 90.9% | 63.6% |
| 3ucxA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 52.0 | 3.39e-01 | 100.0% | 91.1% |
| 5ttjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 50.0 | 3.39e-01 | 100.0% | 96.4% |
| 6oz7B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 48.0 | 3.27e-01 | 100.0% | 89.4% |
| 3w0lD01 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 49.0 | 4.04e-01 | 96.4% | 56.4% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 44.0 | 3.42e-01 | 94.5% | 83.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080761 | 103.12.1.14 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 | 0.72 | 56.0 | 5.36e-01 | 85.5% | 75.0% |
| 5080578 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.69 | 55.0 | 5.57e-01 | 94.5% | 89.1% |
| 3602851 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.59 | 46.0 | 4.25e-01 | 85.5% | 92.9% |
| 3259450 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.58 | 40.0 | 4.27e-01 | 100.0% | 88.9% |
| 4961157 | 4029.1.1.1 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › Sirohm_synth_M | 0.58 | 34.0 | 3.56e-01 | 89.1% | 64.0% |
| 3929290 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.57 | 46.0 | 4.33e-01 | 94.5% | 87.1% |
| 2674774 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.56 | 43.0 | 3.53e-01 | 85.5% | 49.1% |
| None | — | 0.53 | 42.0 | 2.89e-01 | 85.5% | 69.2% | |
| None | — | 0.53 | 42.0 | 2.84e-01 | 85.5% | 69.8% | |
| 3202959 | 103.8.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II | 0.52 | 42.0 | 4.01e-01 | 90.9% | 76.9% |
| 4228771 | 506.2.1.0 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain | 0.52 | 37.0 | 2.67e-01 | 76.4% | 65.0% |
| 2472941 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.51 | 42.0 | 3.95e-01 | 100.0% | 74.7% |
| 3975686 | 6050.1.1.2 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_2 | 0.51 | 41.0 | 3.41e-01 | 92.7% | 58.1% |