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IMGVR_UViG_3300033153_012907-3300033153-Ga0366824_10280811
Arc-VirIMGVR_UViG_3300033153_012907-3300033153-Ga0366824_10280811
Identity
- Kingdom:
- archaea
Quality
72.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 80-168
Domain cluster:
rep: IMGVR_UViG_3300014914_000499-3300014914-Ga0164311_1000021219__D28-96
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02735.23 best | Ku | 34.2 | 3.40e-08 | 96.6% | 37.3% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jeyB02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.81 | 75.0 | 5.66e-01 | 100.0% | 44.8% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.81 | 74.0 | 6.48e-01 | 97.8% | 76.2% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.67 | 37.0 | 4.35e-01 | 96.6% | 77.8% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.60 | 31.0 | 3.00e-01 | 97.8% | 42.0% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 43.0 | 2.99e-01 | 79.8% | 87.6% |
| 6baoA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 42.0 | 3.61e-01 | 76.4% | 69.2% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.58 | 52.0 | 4.20e-01 | 100.0% | 79.1% |
| 3fc7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 42.0 | 4.04e-01 | 76.4% | 97.0% |
| 1d1jB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.57 | 42.0 | 3.72e-01 | 79.8% | 78.7% |
| 4qwoB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.56 | 43.0 | 3.85e-01 | 84.3% | 80.3% |
| 2oolA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 39.0 | 3.70e-01 | 73.0% | 86.0% |
| 4gw9A02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 39.0 | 3.88e-01 | 73.0% | 100.0% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.56 | 44.0 | 3.92e-01 | 92.1% | 60.5% |
| 1sil000 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 40.0 | 2.64e-01 | 75.3% | 98.4% |
| 6g1yA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 40.0 | 3.67e-01 | 76.4% | 75.8% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.54 | 40.0 | 3.45e-01 | 78.7% | 64.6% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.54 | 41.0 | 3.99e-01 | 100.0% | 72.5% |
| 2grgA01 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.53 | 45.0 | 4.63e-01 | 93.3% | 100.0% |
| 4bf3A00 | 2.30.31.50 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F | 0.53 | 38.0 | 3.32e-01 | 96.6% | 50.4% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 39.0 | 2.80e-01 | 80.9% | 91.7% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 38.0 | 3.65e-01 | 76.4% | 85.0% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 32.0 | 2.73e-01 | 100.0% | 35.9% |
| 3nhqA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 37.0 | 3.39e-01 | 74.2% | 74.8% |
| 6h5bB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 40.0 | 3.64e-01 | 83.1% | 73.9% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 35.0 | 3.69e-01 | 100.0% | 79.7% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992391 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.90 | 76.0 | 5.22e-01 | 100.0% | 29.3% |
| 4606042 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.90 | 75.0 | 5.26e-01 | 100.0% | 31.2% |
| 4357706 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.90 | 76.0 | 5.44e-01 | 100.0% | 34.3% |
| 4443775 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.90 | 76.0 | 5.51e-01 | 100.0% | 35.9% |
| 4242756 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.90 | 76.0 | 5.57e-01 | 100.0% | 37.6% |
| 4404169 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.89 | 75.0 | 5.25e-01 | 100.0% | 31.0% |
| 4443286 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.89 | 76.0 | 5.27e-01 | 100.0% | 30.8% |
| 4975015 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.89 | 75.0 | 5.29e-01 | 100.0% | 32.2% |
| 4459347 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.88 | 74.0 | 5.25e-01 | 100.0% | 32.2% |
| 4987158 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.88 | 74.0 | 5.19e-01 | 100.0% | 31.8% |
| 4424918 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.88 | 75.0 | 5.23e-01 | 100.0% | 30.9% |
| 4090669 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.88 | 74.0 | 5.23e-01 | 100.0% | 32.2% |
| 4428892 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.88 | 76.0 | 5.31e-01 | 100.0% | 32.4% |
| 4957926 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.88 | 76.0 | 5.36e-01 | 100.0% | 32.8% |
| 4190768 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.88 | 76.0 | 5.32e-01 | 100.0% | 33.1% |
| 4510810 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.87 | 73.0 | 5.30e-01 | 100.0% | 35.1% |
| 4225561 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.87 | 74.0 | 5.16e-01 | 100.0% | 31.4% |
| 4661211 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.86 | 73.0 | 5.11e-01 | 100.0% | 30.8% |
| 4472148 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.86 | 73.0 | 5.41e-01 | 100.0% | 39.0% |
| 3956932 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.85 | 75.0 | 5.18e-01 | 100.0% | 31.3% |
| 3782750 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.85 | 80.0 | 5.05e-01 | 100.0% | 24.7% |
| 2141295 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.84 | 78.0 | 4.99e-01 | 100.0% | 26.5% |
| 3598291 | 60.1.2.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain | 0.83 | 78.0 | 5.10e-01 | 100.0% | 27.5% |
| 3928082 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.83 | 78.0 | 5.44e-01 | 100.0% | 36.9% |
| 4170346 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.83 | 73.0 | 5.14e-01 | 100.0% | 32.9% |
| 3936044 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.83 | 78.0 | 5.29e-01 | 100.0% | 32.5% |
| 3614925 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.83 | 77.0 | 5.12e-01 | 100.0% | 28.1% |
| 4270575 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.83 | 77.0 | 5.01e-01 | 100.0% | 26.0% |
| 3275277 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.82 | 77.0 | 5.10e-01 | 100.0% | 28.3% |
| 4162129 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.82 | 76.0 | 5.18e-01 | 100.0% | 33.8% |
| 3907624 | 60.1.1.14 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › PF29334 | 0.82 | 77.0 | 6.12e-01 | 100.0% | 60.0% |
| 3517092 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.82 | 76.0 | 5.48e-01 | 98.9% | 46.2% |
| 3222769 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.82 | 76.0 | 4.98e-01 | 100.0% | 27.9% |
| 3393005 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.82 | 76.0 | 5.14e-01 | 100.0% | 34.6% |
| 3551510 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.81 | 76.0 | 5.01e-01 | 100.0% | 27.7% |
| 3843727 | 6140.1.1.2 ↗ | alpha superhelices › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Treslin_M | 0.81 | 74.0 | 5.93e-01 | 97.8% | 53.8% |
| 3744248 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.81 | 76.0 | 5.27e-01 | 100.0% | 37.7% |
| 3476468 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.81 | 75.0 | 5.07e-01 | 100.0% | 34.0% |
| 3497709 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.81 | 75.0 | 5.16e-01 | 100.0% | 35.7% |
| 3483430 | 60.1.2.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain | 0.81 | 75.0 | 5.08e-01 | 100.0% | 34.6% |
| 3478986 | 60.1.2.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain | 0.80 | 74.0 | 4.91e-01 | 100.0% | 29.9% |
| 3773799 | 60.1.1.12 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Treslin_M | 0.80 | 74.0 | 6.35e-01 | 100.0% | 65.2% |
| 4449990 | 60.1.1.12 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Treslin_M | 0.80 | 69.0 | 5.66e-01 | 100.0% | 54.0% |
| 3454464 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.80 | 75.0 | 5.01e-01 | 100.0% | 31.5% |
| 3878508 | 60.1.1.12 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Treslin_M | 0.73 | 62.0 | 5.51e-01 | 98.9% | 65.6% |
| 3723481 | 60.1.1.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain | 0.68 | 62.0 | 5.15e-01 | 100.0% | 66.5% |
| 4069753 | 295.1.1.2 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA | 0.61 | 37.0 | 3.25e-01 | 100.0% | 40.0% |
| 170167 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.58 | 43.0 | 3.73e-01 | 79.8% | 74.6% |
| 4988948 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 45.0 | 4.09e-01 | 84.3% | 80.8% |
| 4965666 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.57 | 43.0 | 3.42e-01 | 79.8% | 88.3% |
| 3968112 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.57 | 45.0 | 3.81e-01 | 86.5% | 85.1% |
| 4136892 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.57 | 40.0 | 4.27e-01 | 74.2% | 85.0% |
| 4500949 | 1.1.5.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF26339 | 0.56 | 43.0 | 4.60e-01 | 97.8% | 96.0% |
| 3840117 | 207.2.1.83 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › VacA2 | 0.55 | 40.0 | 2.32e-01 | 76.4% | 17.6% |
| 3277617 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 43.0 | 4.09e-01 | 84.3% | 90.5% |
| 4930594 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 37.0 | 4.01e-01 | 70.8% | 82.7% |
| 5035338 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.54 | 40.0 | 3.30e-01 | 78.7% | 86.5% |
| 4512379 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 39.0 | 3.56e-01 | 76.4% | 72.0% |
| 3955906 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.53 | 38.0 | 3.94e-01 | 74.2% | 81.2% |
| 4944318 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 39.0 | 3.35e-01 | 77.5% | 59.7% |
| 3252765 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.53 | 40.0 | 3.52e-01 | 80.9% | 75.6% |
| 5007357 | 3435.1.1.10 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF27341 | 0.53 | 43.0 | 3.23e-01 | 88.8% | 38.2% |
| 3973446 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.53 | 40.0 | 3.11e-01 | 84.3% | 86.8% |
| 5016545 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.51 | 37.0 | 3.12e-01 | 76.4% | 64.6% |
| 3615406 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 40.0 | 3.90e-01 | 84.3% | 89.0% |
| 4969909 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 3.35e-01 | 83.1% | 63.3% |
| 5074371 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 38.0 | 3.26e-01 | 79.8% | 57.2% |
| 4946010 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 38.0 | 3.56e-01 | 78.7% | 96.4% |
| 3914585 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 40.0 | 3.77e-01 | 83.1% | 81.0% |