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IMGVR_UViG_3300033155_003386-3300033155-Ga0366827_10693354
Arc-VirIMGVR_UViG_3300033155_003386-3300033155-Ga0366827_10693354
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-265
Domain cluster:
rep: ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00352__D40-229
D2
high
residues 271-325
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.63 | 51.0 | 3.81e-01 | 100.0% | 37.2% |
| 3hrdC02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.63 | 43.0 | 3.43e-01 | 100.0% | 35.4% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.61 | 48.0 | 3.66e-01 | 100.0% | 36.6% |
| 7uclA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 45.0 | 3.67e-01 | 100.0% | 43.1% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.58 | 45.0 | 3.38e-01 | 100.0% | 34.6% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.56 | 40.0 | 4.06e-01 | 100.0% | 77.4% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.56 | 37.0 | 2.85e-01 | 100.0% | 27.5% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 38.0 | 3.52e-01 | 92.7% | 53.2% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.54 | 38.0 | 2.72e-01 | 90.9% | 22.7% |
| 2wkcB00 | 2.40.50.400 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein | 0.54 | 36.0 | 3.20e-01 | 100.0% | 43.8% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 41.0 | 3.37e-01 | 100.0% | 43.8% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 39.0 | 3.21e-01 | 98.2% | 40.5% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 41.0 | 3.28e-01 | 100.0% | 41.4% |
| 3hr6A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 48.0 | 3.40e-01 | 100.0% | 70.7% |
| 3ulpD00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 39.0 | 3.13e-01 | 98.2% | 38.9% |
| 1h54B01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.51 | 44.0 | 2.85e-01 | 100.0% | 46.5% |
| 5e5bA02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.50 | 41.0 | 2.60e-01 | 100.0% | 18.8% |
| 2p0wA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 36.0 | 2.87e-01 | 100.0% | 33.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3825482 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.68 | 55.0 | 4.80e-01 | 100.0% | 58.8% |
| 3709897 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 53.0 | 4.52e-01 | 100.0% | 53.7% |
| 3633470 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.60 | 47.0 | 3.58e-01 | 100.0% | 36.4% |
| 3579353 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.60 | 45.0 | 3.53e-01 | 100.0% | 37.5% |
| 3697700 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.59 | 47.0 | 3.00e-01 | 100.0% | 16.3% |
| 3495218 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.59 | 44.0 | 4.60e-01 | 100.0% | 90.0% |
| 3344144 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.58 | 46.0 | 4.03e-01 | 100.0% | 57.1% |
| 3646089 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.57 | 44.0 | 3.95e-01 | 100.0% | 58.7% |
| 4021980 | 210.2.1.0 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain | 0.57 | 46.0 | 3.00e-01 | 100.0% | 20.1% |
| 3408176 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 40.0 | 3.23e-01 | 100.0% | 36.7% |
| 5046735 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.55 | 48.0 | 3.31e-01 | 100.0% | 35.2% |
| 3389619 | 223.1.1.69 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N | 0.55 | 36.0 | 2.45e-01 | 78.2% | 15.8% |
| 3517405 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 40.0 | 3.74e-01 | 96.4% | 62.9% |
| 4494197 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 41.0 | 3.28e-01 | 100.0% | 40.9% |
| 3735546 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.54 | 47.0 | 3.09e-01 | 100.0% | 29.9% |
| 3251426 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.54 | 43.0 | 3.95e-01 | 100.0% | 65.3% |
| 3640841 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 36.0 | 2.28e-01 | 74.5% | 19.5% |
| 3608810 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 3.94e-01 | 100.0% | 78.9% |
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.53 | 40.0 | 3.23e-01 | 100.0% | 42.2% |
| 3968190 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 37.0 | 3.12e-01 | 100.0% | 45.3% |
| 3586381 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 45.0 | 3.59e-01 | 100.0% | 70.9% |
| 3481274 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.50 | 44.0 | 3.42e-01 | 100.0% | 44.4% |