Back to structures

IMGVR_UViG_3300033156_001187-3300033156-Ga0366836_100643115

Arc-Vir

IMGVR_UViG_3300033156_001187-3300033156-Ga0366836_100643115

Quality

69.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-102
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.78 52.0 4.25e-01 100.0% 38.9%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.78 57.0 4.67e-01 98.6% 44.6%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.78 42.0 4.20e-01 87.3% 50.7%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.72 50.0 4.16e-01 100.0% 43.2%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.66 41.0 3.76e-01 78.9% 47.9%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 57.0 4.48e-01 100.0% 76.6%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.63 54.0 4.76e-01 94.4% 81.9%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 43.0 3.47e-01 100.0% 36.9%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 42.0 3.84e-01 70.4% 78.3%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 53.0 3.58e-01 98.6% 74.1%
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.61 48.0 4.16e-01 98.6% 54.0%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 52.0 4.19e-01 94.4% 56.5%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.60 50.0 3.80e-01 93.0% 40.1%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 47.0 3.38e-01 85.9% 39.4%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.58 47.0 4.13e-01 91.5% 60.2%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 3.09e-01 90.1% 29.9%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.58 46.0 3.65e-01 87.3% 87.0%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 3.33e-01 74.6% 64.7%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.57 50.0 3.28e-01 100.0% 55.0%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.57 51.0 3.47e-01 100.0% 30.2%
5jmfA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 51.0 3.44e-01 100.0% 50.2%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 3.00e-01 91.5% 52.7%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.83e-01 85.9% 49.7%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 48.0 3.93e-01 95.8% 68.5%
2wpgA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.95e-01 76.1% 98.7%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.91e-01 93.0% 57.4%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.77e-01 88.7% 43.1%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 44.0 2.93e-01 93.0% 43.2%
1bagA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 40.0 3.88e-01 77.5% 98.7%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.85e-01 91.5% 22.0%
3it5G00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.54 47.0 3.53e-01 98.6% 53.9%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.87e-01 93.0% 38.1%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.03e-01 94.4% 28.9%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.93e-01 94.4% 22.6%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.53 46.0 4.02e-01 94.4% 71.4%
2gprA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.53 47.0 3.68e-01 100.0% 59.7%
3of7A00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.53 46.0 2.85e-01 98.6% 49.5%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 42.0 3.08e-01 91.5% 90.5%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 43.0 3.60e-01 94.4% 53.0%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.91e-01 93.0% 24.7%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.59e-01 87.3% 95.6%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.51 45.0 3.58e-01 100.0% 48.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 3.59e-01 94.4% 89.6%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.87e-01 98.6% 22.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3614351 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.89 60.0 4.32e-01 87.3% 27.3%
3403585 77.3.1.6 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF30399 0.72 49.0 4.05e-01 100.0% 40.0%
3744012 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.71 52.0 3.23e-01 87.3% 15.0%
3844574 5.1.3.190 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_1st 0.67 48.0 2.95e-01 87.3% 13.2%
3602033 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 60.0 3.58e-01 100.0% 31.8%
3461166 5.1.4.414 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lgl_C 0.63 53.0 3.30e-01 94.4% 22.2%
3764875 77.3.1.1 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C 0.60 53.0 3.83e-01 95.8% 38.4%
3741318 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.20e-01 95.8% 24.1%
3832420 5.1.4.414 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lgl_C 0.60 52.0 3.16e-01 94.4% 21.8%
3256971 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.19e-01 93.0% 24.9%
3555241 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.59 50.0 3.25e-01 93.0% 25.2%
None 0.59 54.0 3.78e-01 100.0% 60.0%
3702949 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 51.0 3.16e-01 93.0% 22.7%
3197766 5.1.4.119 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.59 50.0 2.80e-01 91.5% 51.2%
3477547 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 3.12e-01 93.0% 20.9%
None 0.58 49.0 2.98e-01 91.5% 19.0%
3624582 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 49.0 2.97e-01 93.0% 20.2%
3713177 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 48.0 3.09e-01 93.0% 43.4%
3167247 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.06e-01 91.5% 21.9%
4026203 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.27e-01 93.0% 43.2%
3884680 292.2.1.6 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.58 51.0 4.38e-01 100.0% 62.7%
3200774 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.04e-01 98.6% 28.5%
4000029 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.57 49.0 3.14e-01 93.0% 26.8%
3503026 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 3.06e-01 93.0% 27.5%
4332532 5.1.4.309 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF29630 0.57 49.0 3.02e-01 95.8% 28.5%
3598521 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 2.83e-01 93.0% 36.9%
3317337 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 48.0 3.00e-01 93.0% 23.0%
3915603 5.1.3.225 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40, Beta-prop_SCAP 0.57 48.0 2.88e-01 93.0% 19.8%
4028948 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 51.0 3.13e-01 100.0% 23.3%
3636728 5.1.4.458 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Cytochrom_D1 0.56 48.0 2.97e-01 93.0% 23.8%
3324457 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 2.95e-01 97.2% 20.8%
3926511 5.1.5.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › CNH 0.56 48.0 3.12e-01 93.0% 27.8%
3270016 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.02e-01 93.0% 28.5%
3187835 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.55 51.0 3.56e-01 100.0% 43.8%
6634 241.1.1.3 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.55 48.0 3.93e-01 95.8% 68.5%
3549654 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 50.0 2.74e-01 100.0% 31.9%
3276869 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.86e-01 93.0% 22.0%
1498250 12.3.1.14 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.54 46.0 3.16e-01 100.0% 77.2%
3392217 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.88e-01 97.2% 26.6%
3928030 5.1.4.235 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st 0.54 43.0 2.60e-01 94.4% 27.8%
3472587 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.96e-01 94.4% 32.2%
3742833 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 2.81e-01 93.0% 38.6%
3906082 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.97e-01 93.0% 32.8%
3685439 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.53 45.0 2.52e-01 93.0% 8.8%
3275758 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 46.0 2.79e-01 100.0% 18.6%
3734423 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.77e-01 93.0% 21.0%
2720526 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.88e-01 93.0% 26.0%
4014785 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.52 44.0 3.58e-01 97.2% 63.4%
3632850 5.1.4.119 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.52 47.0 2.92e-01 100.0% 65.7%
3575970 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 43.0 2.64e-01 91.5% 19.6%
3632467 5.1.4.266 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st 0.52 44.0 2.49e-01 93.0% 11.4%
4013024 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.51 41.0 2.63e-01 94.4% 44.9%
3784090 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.65e-01 91.5% 23.4%
3793126 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 42.0 2.79e-01 91.5% 26.6%
5009431 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.51 39.0 3.07e-01 83.1% 85.3%
4108643 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.62e-01 91.5% 52.6%
4012874 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.50e-01 95.8% 10.7%
4021521 5.1.4.322 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT122_1st 0.50 43.0 2.48e-01 94.4% 11.3%
3224940 5.1.5.105 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st 0.50 44.0 2.73e-01 95.8% 22.3%