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IMGVR_UViG_3300033165_000230-3300033165-Ga0334892_10106762

Arc-Vir

IMGVR_UViG_3300033165_000230-3300033165-Ga0334892_10106762

Identity

Kingdom:
archaea

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-78
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zqcA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 53.0 5.56e-01 87.5% 84.4%
1nt2B03 1.10.246.90 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Nop domain 0.71 35.0 3.15e-01 86.1% 34.7%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 5.47e-01 75.0% 100.0%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 5.08e-01 73.6% 98.3%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 5.08e-01 79.2% 88.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.79e-01 80.6% 73.8%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 5.01e-01 79.2% 88.1%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.48e-01 70.8% 100.0%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.53e-01 72.2% 98.4%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.63e-01 76.4% 94.0%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.62 32.0 3.00e-01 79.2% 39.8%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 41.0 3.45e-01 70.8% 86.4%
1iynA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.58 36.0 3.03e-01 72.2% 35.5%
7cm3A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 51.0 3.95e-01 100.0% 80.9%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.54 41.0 4.12e-01 100.0% 79.5%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 47.0 3.11e-01 98.6% 36.2%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.53 38.0 3.49e-01 77.8% 74.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065250 4156.1.1.7 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.78 55.0 4.43e-01 73.6% 77.0%
3602874 4156.1.1.7 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.78 56.0 4.12e-01 75.0% 77.1%
4947376 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.78 55.0 4.44e-01 73.6% 79.2%
3416242 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.75 51.0 4.76e-01 70.8% 78.9%
3494377 101.1.1.66 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.75 53.0 4.69e-01 75.0% 81.9%
3603105 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 5.51e-01 81.9% 84.0%
3958041 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 50.0 5.23e-01 70.8% 80.0%
3200635 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.72 48.0 5.50e-01 70.8% 98.0%
3602903 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 49.0 5.14e-01 70.8% 81.5%
3276095 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.71 49.0 4.66e-01 73.6% 61.2%
160885 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.70 47.0 5.03e-01 70.8% 81.7%
3954386 101.1.1.248 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF772 0.68 56.0 4.86e-01 93.1% 69.6%
None — 0.68 50.0 4.72e-01 80.6% 65.9%
4240067 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.62 45.0 4.54e-01 77.8% 81.3%
3495 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.61 41.0 3.45e-01 70.8% 86.4%
5067054 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 44.0 4.78e-01 77.8% 95.0%
3248755 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.61 46.0 4.44e-01 84.7% 71.8%
4286266 141.1.1.4 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C 0.55 46.0 3.07e-01 97.2% 34.8%
4641280 141.1.1.4 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C 0.53 45.0 2.95e-01 98.6% 34.2%
2410023 141.1.1.8 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.51 45.0 2.98e-01 100.0% 38.4%