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IMGVR_UViG_3300033169_000327-3300033169-Ga0334887_100295521
Arc-VirIMGVR_UViG_3300033169_000327-3300033169-Ga0334887_100295521
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-154
Domain cluster:
rep: IMGVR_UViG_3300022855_000154-3300022855-Ga0222677_100027630__D29-158
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.68 | 41.0 | 5.11e-01 | 86.2% | 100.0% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.65 | 45.0 | 4.70e-01 | 70.0% | 100.0% |
| 4qmfB01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.63 | 30.0 | 3.63e-01 | 88.5% | 67.1% |
| 2ddhA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.63 | 40.0 | 4.20e-01 | 73.1% | 70.3% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.61 | 30.0 | 3.53e-01 | 89.2% | 64.4% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 39.0 | 4.56e-01 | 100.0% | 92.3% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.59 | 29.0 | 4.01e-01 | 81.5% | 96.8% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 26.0 | 3.62e-01 | 93.8% | 86.7% |
| 1tzlA02 | 3.30.1920.50 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › | 0.59 | 26.0 | 3.57e-01 | 82.3% | 83.9% |
| 2nr7A00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.58 | 46.0 | 4.00e-01 | 83.1% | 97.9% |
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 23.0 | 3.22e-01 | 93.1% | 80.4% |
| 1tuaA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.58 | 29.0 | 3.44e-01 | 86.2% | 70.2% |
| 2fkiA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.57 | 28.0 | 3.01e-01 | 87.7% | 51.7% |
| 1t9xA05 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.56 | 50.0 | 4.24e-01 | 100.0% | 60.4% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.56 | 39.0 | 4.08e-01 | 71.5% | 94.9% |
| 2wdqA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.55 | 20.0 | 3.29e-01 | 82.3% | 100.0% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.54 | 42.0 | 4.49e-01 | 91.5% | 98.2% |
| 2radA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.53 | 39.0 | 3.96e-01 | 91.5% | 78.0% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.53 | 39.0 | 4.17e-01 | 90.8% | 90.4% |
| 4nswB01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 36.0 | 2.92e-01 | 73.1% | 67.2% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 40.0 | 3.31e-01 | 84.6% | 71.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3411768 | 627.1.1.2 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 | 0.78 | 55.0 | 6.40e-01 | 87.7% | 100.0% |
| 3174900 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.71 | 51.0 | 5.68e-01 | 90.0% | 92.4% |
| 4277373 | 4994.1.1.1 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 | 0.70 | 49.0 | 5.61e-01 | 70.8% | 98.9% |
| 5042930 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.62 | 54.0 | 4.35e-01 | 94.6% | 51.6% |
| 1395462 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.61 | 47.0 | 4.78e-01 | 100.0% | 84.7% |
| 3182801 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.61 | 49.0 | 4.90e-01 | 93.1% | 85.4% |
| 5061943 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.58 | 41.0 | 4.23e-01 | 73.1% | 91.2% |
| 3987246 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.58 | 38.0 | 3.01e-01 | 95.4% | 31.3% |
| 3990679 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.57 | 52.0 | 4.18e-01 | 100.0% | 67.2% |
| 3595714 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 46.0 | 3.76e-01 | 88.5% | 78.0% |
| 3771911 | 109.4.1.1512 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcp11 | 0.56 | 39.0 | 3.53e-01 | 88.5% | 49.5% |
| 3505840 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.55 | 31.0 | 3.56e-01 | 72.3% | 76.7% |
| 3668063 | 150.1.1.89 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TRAM_LAG1_CLN8 | 0.54 | 47.0 | 3.87e-01 | 94.6% | 79.2% |
| 3170063 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.53 | 47.0 | 4.20e-01 | 100.0% | 70.0% |
| 4001046 | 109.4.1.342 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SBF2 | 0.53 | 46.0 | 3.63e-01 | 97.7% | 68.6% |
| 3924458 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 40.0 | 3.76e-01 | 82.3% | 64.2% |
| 3967618 | 604.5.1.33 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › FUSC | 0.52 | 45.0 | 3.99e-01 | 94.6% | 90.0% |
| 4965624 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.52 | 38.0 | 3.11e-01 | 77.7% | 39.4% |
| None | — | 0.52 | 42.0 | 3.00e-01 | 87.7% | 52.8% | |
| None | — | 0.51 | 43.0 | 3.02e-01 | 90.0% | 40.5% | |
| 3788795 | 320.5.1.0 ↗ | a+b two layers › R3H domain-like | 0.51 | 35.0 | 3.83e-01 | 85.4% | 88.6% |
| 3656580 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.50 | 35.0 | 3.18e-01 | 82.3% | 52.6% |
| 5018143 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.50 | 44.0 | 4.07e-01 | 97.7% | 90.0% |