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IMGVR_UViG_3300033169_000327-3300033169-Ga0334887_100295522

Arc-Vir

IMGVR_UViG_3300033169_000327-3300033169-Ga0334887_100295522

Identity

Kingdom:
archaea

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-123
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.77 34.0 4.88e-01 81.8% 97.0%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.75 35.0 4.52e-01 93.5% 79.1%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.72 33.0 4.60e-01 83.1% 100.0%
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.68 46.0 5.27e-01 88.3% 98.2%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 30.0 4.01e-01 79.2% 100.0%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.65 57.0 4.59e-01 100.0% 79.9%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.64 55.0 4.50e-01 100.0% 80.0%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.64 55.0 4.57e-01 100.0% 83.3%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.62 54.0 4.60e-01 100.0% 88.1%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 35.0 4.05e-01 98.7% 78.2%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.60 42.0 3.36e-01 72.7% 52.2%
1dymA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.59 48.0 3.04e-01 88.3% 97.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.70e-01 98.7% 95.6%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.71e-01 76.6% 60.4%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.56 46.0 4.24e-01 88.3% 95.9%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.16e-01 76.6% 86.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.55 40.0 3.92e-01 100.0% 69.3%
1hezE00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 40.0 4.43e-01 87.0% 98.4%
3ng0A01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.54 45.0 4.12e-01 93.5% 86.4%
4p16A01 3.10.20.540 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Papain-like viral protease, N-terminal domain 0.54 37.0 4.16e-01 87.0% 100.0%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.53 43.0 3.93e-01 92.2% 81.1%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.31e-01 94.8% 91.8%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.68e-01 96.1% 87.6%
2r01A02 2.20.180.10 Mainly Beta › Single Sheet › putative fmn-dependent nitroreductase like fold › putative fmn-dependent nitroreductase like domains 0.53 26.0 3.19e-01 89.6% 78.6%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 36.0 4.15e-01 100.0% 98.2%
1ttnA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 42.0 4.29e-01 88.3% 98.6%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 34.0 3.62e-01 92.2% 78.8%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.72e-01 96.1% 87.5%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.51 40.0 3.75e-01 89.6% 83.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586791 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.79 35.0 5.09e-01 97.4% 94.3%
3788868 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.74 35.0 4.60e-01 98.7% 80.0%
3707784 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.74 33.0 4.77e-01 94.8% 94.3%
3553698 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.73 34.0 4.42e-01 75.3% 77.8%
3265851 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.73 37.0 4.91e-01 79.2% 92.5%
3568187 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.72 35.0 4.79e-01 77.9% 100.0%
4003256 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.72 35.0 4.35e-01 81.8% 74.0%
3624687 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.71 38.0 4.68e-01 77.9% 82.0%
4028139 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.71 39.0 4.56e-01 75.3% 76.4%
3328886 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.71 38.0 4.52e-01 75.3% 76.4%
3225116 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 36.0 4.89e-01 98.7% 100.0%
4024069 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.64 55.0 4.46e-01 100.0% 80.0%
222939 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 36.0 4.09e-01 98.7% 76.8%
3617175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.76e-01 98.7% 96.4%
5069121 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.63 45.0 5.00e-01 93.5% 98.3%
4238585 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.63 42.0 4.91e-01 97.4% 100.0%
3710545 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.61 41.0 4.20e-01 70.1% 89.3%
4279904 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 40.0 2.78e-01 71.4% 49.5%
3415548 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.58 47.0 4.54e-01 90.9% 98.9%
3414339 11.1.5.84 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › ERMP1_C 0.58 47.0 3.51e-01 88.3% 99.5%
3213122 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.58 41.0 3.73e-01 75.3% 58.1%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 39.0 4.30e-01 96.1% 91.7%
3516180 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.56 39.0 3.50e-01 71.4% 98.1%
145199 221.1.1.50 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.56 46.0 4.24e-01 88.3% 95.9%
3505861 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.55 38.0 2.65e-01 71.4% 36.3%
3816395 1.1.11.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.55 45.0 3.61e-01 89.6% 49.7%
3923261 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.54 37.0 3.27e-01 71.4% 82.5%
3347504 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.54 38.0 4.03e-01 77.9% 82.9%
4982441 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 43.0 4.22e-01 89.6% 97.6%
3574639 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 44.0 3.02e-01 94.8% 77.2%
4544763 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.52 42.0 3.59e-01 89.6% 73.8%
4426280 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.52 42.0 4.05e-01 90.9% 94.4%
4982442 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 41.0 3.97e-01 88.3% 93.3%
3890518 2484.1.1.239 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 0.52 38.0 2.35e-01 79.2% 82.2%
3427901 2484.1.1.215 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.51 34.0 2.53e-01 70.1% 42.7%
3293538 6.1.1.2 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume 0.51 42.0 3.15e-01 90.9% 47.4%
3301697 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 39.0 2.53e-01 88.3% 90.3%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.51 37.0 3.87e-01 80.5% 90.0%
3167022 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.50 44.0 2.67e-01 97.4% 21.6%
3457175 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 34.0 2.44e-01 71.4% 38.1%
D2 medium residues 147-237
PDB