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IMGVR_UViG_3300033170_000010-3300033170-Ga0334884_100153052

Arc-Vir

IMGVR_UViG_3300033170_000010-3300033170-Ga0334884_100153052

Quality

78.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-49
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fsdA02 3.40.5.100 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.82 71.0 5.87e-01 100.0% 60.5%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.81 67.0 6.74e-01 100.0% 95.7%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.77 57.0 5.58e-01 97.9% 75.0%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.72 62.0 5.75e-01 100.0% 90.0%
3jc6C00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 61.0 4.28e-01 100.0% 30.8%
2e9xG00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 61.0 4.11e-01 100.0% 26.2%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 55.0 4.48e-01 100.0% 88.3%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 4.85e-01 100.0% 98.5%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 53.0 4.85e-01 100.0% 93.5%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 4.70e-01 100.0% 89.1%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.94e-01 100.0% 96.5%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.61 49.0 3.49e-01 100.0% 43.8%
1ivzA00 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.60 47.0 3.68e-01 100.0% 85.6%
4bndA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.60 44.0 3.65e-01 85.1% 84.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.66e-01 100.0% 96.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.50e-01 100.0% 82.4%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.59 41.0 3.20e-01 76.6% 74.1%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.19e-01 100.0% 72.6%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.39e-01 100.0% 82.9%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.68e-01 97.9% 100.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.48e-01 100.0% 86.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.61e-01 100.0% 98.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.60e-01 100.0% 98.3%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.57 49.0 3.25e-01 100.0% 30.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.55e-01 100.0% 96.6%
4amwA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 41.0 3.67e-01 78.7% 66.2%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.51e-01 100.0% 100.0%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.02e-01 100.0% 70.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.32e-01 100.0% 95.3%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.56 48.0 3.94e-01 100.0% 82.2%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.35e-01 100.0% 95.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.26e-01 97.9% 93.7%
4c98A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.20e-01 93.6% 94.9%
4ntlA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 38.0 2.94e-01 80.9% 93.4%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 3.81e-01 100.0% 84.9%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.54 40.0 2.99e-01 95.7% 46.4%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 39.0 2.32e-01 76.6% 75.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 3.85e-01 100.0% 78.7%
1q45A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 40.0 2.44e-01 87.2% 76.2%
4n6dA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.50 41.0 2.55e-01 100.0% 24.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3683742 4076.3.1.8 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.85 73.0 6.74e-01 100.0% 75.0%
4024535 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.84 65.0 6.17e-01 100.0% 70.9%
4991614 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.83 70.0 6.65e-01 100.0% 80.0%
5009 4076.3.1.2 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.81 67.0 6.62e-01 100.0% 89.8%
4981952 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.81 70.0 6.95e-01 100.0% 92.0%
4956454 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.80 66.0 6.35e-01 100.0% 80.0%
4358525 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.80 68.0 6.71e-01 97.9% 90.0%
4935547 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.80 71.0 7.00e-01 100.0% 96.0%
4932084 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 69.0 6.82e-01 100.0% 96.0%
5024995 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 68.0 6.63e-01 100.0% 88.7%
4982789 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 68.0 6.10e-01 97.9% 70.8%
4951589 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.78 68.0 6.76e-01 100.0% 96.0%
5083883 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 63.0 6.39e-01 100.0% 95.6%
3450949 4207.1.2.63 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › DUF1677 0.78 50.0 3.84e-01 93.6% 31.0%
5049679 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 68.0 6.28e-01 100.0% 80.0%
5015232 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 67.0 6.40e-01 100.0% 85.5%
5069341 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 66.0 6.49e-01 100.0% 96.0%
3592220 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.76 66.0 5.65e-01 100.0% 62.2%
3712471 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.75 65.0 5.74e-01 100.0% 66.7%
5023430 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.75 66.0 6.09e-01 100.0% 83.3%
4932061 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.75 64.0 6.54e-01 97.9% 100.0%
3714926 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.75 58.0 5.77e-01 100.0% 82.0%
5063665 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.74 60.0 6.15e-01 97.9% 97.8%
4967982 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.74 60.0 6.18e-01 95.7% 100.0%
4613882 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.73 59.0 5.91e-01 100.0% 90.0%
4593896 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.73 60.0 6.10e-01 95.7% 95.6%
5035097 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.73 60.0 6.16e-01 97.9% 97.8%
4934987 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 59.0 6.03e-01 95.7% 95.6%
4939553 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.72 61.0 6.01e-01 100.0% 90.0%
4057802 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.72 61.0 6.23e-01 97.9% 97.8%
4952672 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 63.0 6.05e-01 100.0% 87.3%
3606398 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.72 56.0 5.39e-01 100.0% 74.5%
4200990 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 61.0 6.01e-01 100.0% 90.0%
4031645 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.71 60.0 5.96e-01 100.0% 98.0%
3945816 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.71 64.0 4.95e-01 100.0% 94.0%
4048813 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.71 57.0 5.48e-01 100.0% 78.2%
4536596 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.71 60.0 6.02e-01 100.0% 95.8%
4169249 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.71 60.0 6.02e-01 100.0% 95.8%
4280403 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.70 58.0 5.91e-01 95.7% 97.8%
4083057 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.70 58.0 5.72e-01 100.0% 90.0%
3593797 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.70 53.0 5.15e-01 100.0% 74.5%
4291660 4076.3.1.7 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › DUF2635 0.69 57.0 5.69e-01 100.0% 93.9%
3270868 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.69 55.0 5.32e-01 100.0% 78.2%
3600188 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.68 52.0 5.01e-01 100.0% 74.5%
5068408 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 53.0 5.45e-01 95.7% 95.6%
5033467 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 55.0 5.52e-01 100.0% 97.9%
4032281 268.2.1.1 a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr 0.64 54.0 3.39e-01 100.0% 21.1%
499 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 50.0 4.30e-01 100.0% 88.0%
3879166 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.60 49.0 4.31e-01 100.0% 91.3%
3482676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.71e-01 100.0% 98.3%
4976636 304.24.1.5 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.59 47.0 4.29e-01 100.0% 91.4%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 49.0 4.61e-01 100.0% 95.0%
3519380 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 49.0 4.20e-01 100.0% 83.7%
4003181 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 48.0 4.49e-01 97.9% 100.0%
4957143 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.56 43.0 3.25e-01 87.2% 100.0%
4339411 7516.1.1.1 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.56 42.0 2.60e-01 83.0% 49.3%
4103373 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.54 46.0 4.38e-01 97.9% 94.5%
4087422 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.52 37.0 3.38e-01 100.0% 52.0%