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IMGVR_UViG_3300033170_000053-3300033170-Ga0334884_100475316
Arc-VirIMGVR_UViG_3300033170_000053-3300033170-Ga0334884_100475316
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-29_158-245
Domain cluster:
rep: IMGVR_UViG_3300028903_000137-3300028903-Ga0302250_10045641__D61-134
D2
medium
residues 73-157_356-418
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 23.0 | 2.70e-01 | 81.1% | 50.9% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 22.0 | 3.06e-01 | 72.3% | 73.3% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.52 | 31.0 | 3.73e-01 | 97.3% | 92.5% |
| 3vtiA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 30.0 | 3.52e-01 | 92.6% | 85.4% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.51 | 46.0 | 3.86e-01 | 99.3% | 99.6% |
| 2qlzA02 | 6.10.250.2960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 26.0 | 3.45e-01 | 77.0% | 87.2% |
| 2p5vA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.51 | 29.0 | 3.61e-01 | 95.9% | 96.4% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.51 | 30.0 | 3.56e-01 | 98.0% | 86.7% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 28.0 | 2.99e-01 | 77.7% | 59.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3968121 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.62 | 44.0 | 4.36e-01 | 98.0% | 68.1% |
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.60 | 55.0 | 4.31e-01 | 100.0% | 75.7% |
| 3164784 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.59 | 55.0 | 4.31e-01 | 100.0% | 74.7% |
| 3857887 | 5094.1.1.11 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 | 0.54 | 28.0 | 3.78e-01 | 89.9% | 97.3% |
| 3560901 | 601.19.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 | 0.54 | 28.0 | 3.78e-01 | 89.9% | 97.3% |
| 5033725 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.53 | 20.0 | 2.58e-01 | 70.3% | 56.5% |
| 3264668 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.52 | 20.0 | 2.68e-01 | 76.4% | 61.3% |
| 216794 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.51 | 44.0 | 3.79e-01 | 92.6% | 95.3% |
D3
medium
residues 252-346
Domain cluster:
rep: NC_055028.1__YP_010082171.1__KMD17_gp04__00004__D222-316
D4
medium
residues 419-469
Domain cluster:
rep: IMGVR_UViG_3300033167_000075-3300033167-Ga0334898_10107668__D72-123