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IMGVR_UViG_3300033170_000321-3300033170-Ga0334884_10130025
Arc-VirIMGVR_UViG_3300033170_000321-3300033170-Ga0334884_10130025
Identity
- Kingdom:
- archaea
Quality
96.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-110
Domain cluster:
rep: IMGVR_UViG_3300007291_000015-3300007291-Ga0066367_10042001__D206-305
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03989.19 best | DNA_gyraseA_C | 48.4 | 7.00e-13 | 42.7% | 87.5% |
| PF03989.19 | DNA_gyraseA_C | 28.0 | 1.70e-06 | 40.0% | 89.6% |
D2
medium
residues 111-210
Domain cluster:
rep: SRR1747035_scaffold_2_prodigal-single.1__X__X__00087__D1-93
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03989.19 best | DNA_gyraseA_C | 61.3 | 6.30e-17 | 48.0% | 100.0% |
| PF03989.19 | DNA_gyraseA_C | 41.1 | 1.30e-10 | 43.0% | 85.4% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l6vA00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.95 | 91.0 | 6.13e-01 | 100.0% | 32.9% |
| 3uc1A00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.94 | 90.0 | 6.12e-01 | 100.0% | 34.0% |
| 1suuA00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.93 | 90.0 | 6.14e-01 | 100.0% | 34.8% |
| 1wp5A00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.91 | 87.0 | 5.86e-01 | 100.0% | 32.3% |
| 3no0A00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.85 | 79.0 | 5.62e-01 | 100.0% | 36.2% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 40.0 | 4.45e-01 | 97.0% | 82.3% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 43.0 | 4.74e-01 | 99.0% | 91.3% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 4.22e-01 | 100.0% | 87.4% |
| 3lgdA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.55 | 43.0 | 2.85e-01 | 86.0% | 78.4% |
| 1wzoB02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.54 | 43.0 | 3.57e-01 | 90.0% | 78.8% |
| 3dlqR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 4.03e-01 | 100.0% | 78.0% |
| 1a21B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.98e-01 | 95.0% | 78.6% |
| 2waaA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 40.0 | 3.72e-01 | 100.0% | 64.2% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.53 | 37.0 | 3.51e-01 | 90.0% | 60.8% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4388717 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.98 | 95.0 | 6.36e-01 | 100.0% | 32.4% |
| 4074611 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.98 | 95.0 | 6.36e-01 | 100.0% | 34.4% |
| 5040277 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.98 | 95.0 | 6.31e-01 | 100.0% | 32.3% |
| 4150603 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.98 | 95.0 | 6.31e-01 | 100.0% | 31.9% |
| 4186650 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.98 | 95.0 | 6.34e-01 | 100.0% | 32.5% |
| 4279289 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.97 | 94.0 | 6.25e-01 | 100.0% | 31.4% |
| 4589818 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.97 | 93.0 | 6.28e-01 | 99.0% | 33.1% |
| 4271590 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.97 | 93.0 | 6.19e-01 | 99.0% | 32.8% |
| 4946214 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.97 | 94.0 | 6.23e-01 | 100.0% | 34.2% |
| 5082153 | 5.2.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel | 0.97 | 94.0 | 6.30e-01 | 100.0% | 32.9% |
| 4102294 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.97 | 94.0 | 6.27e-01 | 100.0% | 32.7% |
| 4331124 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.97 | 94.0 | 6.05e-01 | 100.0% | 41.1% |
| 4569696 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.97 | 94.0 | 6.23e-01 | 100.0% | 32.5% |
| 5024979 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.97 | 92.0 | 6.21e-01 | 99.0% | 32.6% |
| 5053478 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.96 | 93.0 | 6.24e-01 | 100.0% | 32.7% |
| 4602375 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.96 | 93.0 | 6.06e-01 | 100.0% | 38.6% |
| 4429482 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.96 | 91.0 | 6.04e-01 | 99.0% | 33.1% |
| 4935505 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.95 | 91.0 | 6.17e-01 | 100.0% | 32.8% |
| 4505869 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.94 | 91.0 | 6.09e-01 | 100.0% | 32.4% |
| 4177906 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.94 | 90.0 | 6.07e-01 | 100.0% | 33.5% |
| 5059693 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.94 | 90.0 | 6.11e-01 | 100.0% | 34.0% |
| 4421198 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.92 | 88.0 | 6.70e-01 | 100.0% | 50.7% |
| 4606923 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.92 | 86.0 | 5.74e-01 | 100.0% | 29.7% |
| 4028934 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.92 | 84.0 | 5.79e-01 | 100.0% | 32.5% |
| 4493828 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.92 | 87.0 | 5.99e-01 | 100.0% | 34.1% |
| 3445642 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.92 | 88.0 | 5.78e-01 | 100.0% | 29.3% |
| 4261933 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.91 | 87.0 | 5.87e-01 | 100.0% | 32.8% |
| 2179 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.91 | 87.0 | 5.85e-01 | 100.0% | 32.2% |
| 4609257 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.90 | 86.0 | 5.74e-01 | 100.0% | 31.2% |
| 4214118 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.88 | 83.0 | 5.81e-01 | 100.0% | 35.5% |
| 5007962 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.87 | 83.0 | 5.73e-01 | 100.0% | 34.8% |
| 4075947 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.87 | 79.0 | 5.82e-01 | 100.0% | 40.9% |
| 4410663 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.86 | 77.0 | 5.64e-01 | 100.0% | 39.6% |
| 3959000 | 5.2.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel | 0.85 | 80.0 | 6.09e-01 | 99.0% | 49.3% |
| 3969629 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.82 | 77.0 | 5.58e-01 | 100.0% | 41.6% |
| 3164811 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.82 | 77.0 | 5.58e-01 | 100.0% | 41.6% |
| 4250515 | 5.2.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel | 0.82 | 77.0 | 5.59e-01 | 100.0% | 42.3% |
| 2526350 | 1.17.1.0 ↗ | beta barrels › cradle loop barrel | 0.67 | 46.0 | 5.22e-01 | 94.0% | 93.4% |
| 3941085 | 11.1.6.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain | 0.60 | 54.0 | 4.85e-01 | 100.0% | 86.4% |
| 3248572 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.57 | 42.0 | 4.65e-01 | 98.0% | 96.2% |
| 3560830 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.57 | 39.0 | 4.14e-01 | 100.0% | 80.0% |
| 5034410 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 42.0 | 4.20e-01 | 100.0% | 79.0% |
| 3528768 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 38.0 | 4.04e-01 | 100.0% | 80.0% |
| 5040269 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 39.0 | 4.23e-01 | 100.0% | 88.2% |
| 3406560 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.55 | 39.0 | 3.48e-01 | 76.0% | 92.0% |
| 5038807 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.53 | 39.0 | 3.50e-01 | 78.0% | 92.1% |
| 5007113 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.53 | 39.0 | 3.61e-01 | 78.0% | 97.7% |
| 4930200 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.52 | 39.0 | 3.56e-01 | 78.0% | 96.2% |
| 3569194 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 39.0 | 3.88e-01 | 100.0% | 78.1% |
| 3800901 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 38.0 | 3.81e-01 | 100.0% | 77.1% |
| 5051640 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.50 | 37.0 | 3.27e-01 | 77.0% | 90.3% |