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IMGVR_UViG_3300033171_000009-3300033171-Ga0334895_100071463

Arc-Vir

IMGVR_UViG_3300033171_000009-3300033171-Ga0334895_100071463

Quality

60.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 88-150
PDB
D2 medium residues 151-230
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.72 62.0 6.18e-01 92.5% 98.8%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.67 59.0 5.75e-01 100.0% 93.3%
3kuqA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.65 48.0 3.68e-01 80.0% 40.6%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.64 47.0 4.38e-01 77.5% 71.7%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 47.0 4.98e-01 92.5% 94.3%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.61 50.0 4.26e-01 93.8% 60.1%
1eqfA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 51.0 4.54e-01 98.8% 84.0%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 48.0 4.77e-01 87.5% 98.8%
1cpcB00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.60 53.0 4.16e-01 100.0% 61.6%
5c00D00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 51.0 3.86e-01 97.5% 61.8%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.58 49.0 4.13e-01 97.5% 97.9%
2yw5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 48.0 4.05e-01 92.5% 75.4%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.57 47.0 3.51e-01 98.8% 98.0%
1wvuB02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.56 46.0 3.64e-01 96.2% 81.6%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 48.0 4.27e-01 98.8% 83.6%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 48.0 4.32e-01 100.0% 96.7%
2datA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 48.0 4.28e-01 100.0% 88.6%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 40.0 3.64e-01 76.2% 85.7%
3q1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.56 45.0 3.82e-01 90.0% 72.7%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.55 40.0 4.10e-01 77.5% 82.1%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 44.0 3.85e-01 86.3% 88.3%
3h37A03 1.20.58.1960 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 37.0 3.30e-01 71.2% 95.3%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 48.0 4.02e-01 100.0% 81.4%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 40.0 3.35e-01 80.0% 59.7%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.54 41.0 4.11e-01 87.5% 93.0%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 3.85e-01 100.0% 70.9%
2i6jA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 40.0 3.29e-01 83.7% 54.7%
1cscA01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.52 45.0 3.11e-01 100.0% 91.9%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.54e-01 98.8% 61.8%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.51 40.0 3.37e-01 87.5% 74.8%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 37.0 3.46e-01 95.0% 60.8%
1e2aA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 35.0 3.30e-01 100.0% 57.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048002 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.75 59.0 4.88e-01 83.7% 67.4%
4501343 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 48.0 5.56e-01 71.2% 96.4%
3741291 592.1.1.6 alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.73 60.0 6.08e-01 100.0% 91.3%
5078022 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.68 59.0 5.98e-01 97.5% 96.2%
3744152 551.1.1.1 alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.68 48.0 4.16e-01 75.0% 64.0%
4048642 101.1.1.304 alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.67 47.0 5.21e-01 72.5% 93.7%
4520559 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.67 57.0 5.66e-01 96.2% 96.5%
5039202 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.64 55.0 4.01e-01 100.0% 35.0%
4588604 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.63 56.0 3.89e-01 100.0% 29.6%
4434935 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.62 52.0 4.40e-01 95.0% 60.0%
3481514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 3.71e-01 77.5% 60.7%
3967708 179.1.1.1 alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.61 51.0 4.91e-01 92.5% 98.9%
3168797 5001.1.1.190 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › NPR3 0.61 53.0 4.98e-01 100.0% 81.8%
3786647 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.60 46.0 4.70e-01 86.3% 93.8%
3218544 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 46.0 4.67e-01 83.7% 100.0%
5074957 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 35.0 3.78e-01 96.2% 68.6%
4025383 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.59 44.0 3.62e-01 81.2% 56.1%
3270283 609.1.1.1 alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg 0.57 44.0 3.78e-01 83.7% 88.1%
4223251 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.56 40.0 3.30e-01 100.0% 41.4%
3175191 627.1.1.1 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.56 43.0 3.44e-01 85.0% 51.2%
3716219 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 46.0 4.14e-01 98.8% 84.2%
3713912 633.21.1.22 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › COPI_assoc 0.55 43.0 3.78e-01 85.0% 97.5%
3278427 608.1.1.0 alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.55 46.0 3.57e-01 95.0% 48.6%
3286958 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.53 38.0 2.90e-01 76.2% 58.5%
None 0.53 40.0 3.31e-01 82.5% 58.7%
3993211 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.52 41.0 3.42e-01 91.3% 83.7%
3784243 109.4.1.1828 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOP1_M 0.51 43.0 2.47e-01 95.0% 11.5%
3698538 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.50 39.0 3.22e-01 85.0% 90.0%
D3 medium residues 231-305
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04233.20 best Phage_Mu_F 32.8 1.40e-07 73.3% 44.6%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 48.0 4.24e-01 85.3% 84.5%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 42.0 4.37e-01 80.0% 79.4%
2fp4B02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 48.0 4.53e-01 88.0% 86.8%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.58 46.0 4.13e-01 86.7% 78.3%
2e0nB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 39.0 3.52e-01 90.7% 49.1%
5o6uB00 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.57 43.0 3.36e-01 85.3% 75.8%
1glvA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 28.0 2.52e-01 92.0% 30.6%
7xc8A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.56 41.0 3.71e-01 81.3% 96.5%
2zotC00 2.60.40.4060 Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain 0.54 42.0 3.55e-01 88.0% 77.9%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.88e-01 86.7% 84.7%
4ipuA00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.52 35.0 2.99e-01 70.7% 68.6%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.75e-01 72.0% 82.4%
1ni3A02 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 39.0 3.55e-01 81.3% 66.0%
1wwyA00 2.60.120.470 Mainly Beta › Sandwich › Jelly Rolls › PITH domain 0.51 42.0 3.34e-01 96.0% 68.4%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.39e-01 88.0% 96.2%
1s6lA02 3.15.10.60 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase 0.51 38.0 3.25e-01 81.3% 47.3%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.51 37.0 3.34e-01 82.7% 94.1%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.38e-01 89.3% 57.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964369 6108.1.1.8 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Phage_Mu_F 0.86 68.0 4.60e-01 84.0% 26.8%
4032640 601.19.1.3 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.86 72.0 4.63e-01 89.3% 21.6%
3946757 601.19.1.3 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.78 60.0 4.21e-01 81.3% 29.3%
3649311 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.66 49.0 3.74e-01 80.0% 87.2%
605 4.1.2.1 beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.58 46.0 4.13e-01 86.7% 78.3%
3595569 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.07e-01 92.0% 87.6%
3591649 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.98e-01 92.0% 86.4%
3591347 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.97e-01 92.0% 84.5%
5043304 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 3.59e-01 84.0% 84.2%
3786252 11.2.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF29592 0.54 41.0 3.34e-01 88.0% 78.2%
4346242 219.1.1.153 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.54 41.0 3.22e-01 85.3% 49.7%
4942451 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.78e-01 88.0% 78.2%
4292822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.15e-01 88.0% 90.7%
3784080 10.32.1.24 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PITH 0.52 40.0 3.02e-01 85.3% 81.0%
5061709 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.52 40.0 3.93e-01 86.7% 90.6%
5072839 101.21.1.0 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit 0.52 36.0 2.97e-01 73.3% 82.9%
3937325 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.51 41.0 3.27e-01 93.3% 98.8%
None 0.50 43.0 2.59e-01 100.0% 79.8%