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IMGVR_UViG_3300033175_000040-3300033175-Ga0334890_10030921
Arc-VirIMGVR_UViG_3300033175_000040-3300033175-Ga0334890_10030921
Identity
- Kingdom:
- archaea
Quality
70.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-67
Domain cluster:
rep: IMGVR_UViG_3300009647_000327-3300009647-Ga0123326_10058842__D4-53
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20586.4 best | DUF6788 | 67.2 | 1.40e-18 | 90.8% | 68.1% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.70 | 47.0 | 4.50e-01 | 92.3% | 59.7% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.66 | 38.0 | 4.04e-01 | 89.2% | 64.3% |
| 3zleA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.65 | 31.0 | 3.82e-01 | 70.8% | 71.8% |
| 1vraA00 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.58 | 39.0 | 2.90e-01 | 72.3% | 93.2% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 48.0 | 3.23e-01 | 92.3% | 95.7% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.56 | 37.0 | 3.98e-01 | 72.3% | 82.7% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 41.0 | 3.38e-01 | 81.5% | 65.6% |
| 5xrwC00 | 2.30.330.10 | Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like | 0.56 | 33.0 | 3.17e-01 | 83.1% | 46.2% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.56 | 42.0 | 3.78e-01 | 81.5% | 78.3% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 41.0 | 4.45e-01 | 83.1% | 96.4% |
| 1dfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 39.0 | 2.91e-01 | 80.0% | 86.7% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 48.0 | 3.82e-01 | 100.0% | 76.2% |
| 1ryp100 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 39.0 | 2.75e-01 | 83.1% | 94.1% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 29.0 | 3.42e-01 | 80.0% | 94.6% |
| 3er0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 36.0 | 3.53e-01 | 75.4% | 95.9% |
| 4dimA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 44.0 | 3.11e-01 | 100.0% | 38.3% |
| 2kknA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 36.0 | 2.71e-01 | 73.8% | 100.0% |
| 1a9xA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 43.0 | 3.12e-01 | 100.0% | 39.9% |
| 5kolD00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.51 | 40.0 | 3.03e-01 | 90.8% | 70.3% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 3.43e-01 | 92.3% | 59.5% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 38.0 | 3.47e-01 | 89.2% | 71.3% |
| 1v7pB00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.50 | 39.0 | 3.24e-01 | 89.2% | 81.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967510 | 3454.1.1.0 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like | 0.65 | 38.0 | 3.70e-01 | 83.1% | 52.9% |
| 4000387 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 41.0 | 3.48e-01 | 83.1% | 41.0% |
| 3386077 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.60 | 35.0 | 3.95e-01 | 83.1% | 80.0% |
| 5067695 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.59 | 37.0 | 4.22e-01 | 72.3% | 93.3% |
| 5080233 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.58 | 41.0 | 2.66e-01 | 73.8% | 82.3% |
| 3920450 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.58 | 46.0 | 3.23e-01 | 92.3% | 40.3% |
| 4025093 | 6127.1.1.1 ↗ | beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma | 0.57 | 41.0 | 3.56e-01 | 75.4% | 57.0% |
| 4413985 | 5.1.4.42 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_4 | 0.55 | 47.0 | 3.02e-01 | 100.0% | 45.2% |
| 4023312 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 42.0 | 3.44e-01 | 83.1% | 71.2% |
| 4485741 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.55 | 48.0 | 2.77e-01 | 100.0% | 16.0% |
| 3499134 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.55 | 46.0 | 3.52e-01 | 90.8% | 75.7% |
| 3663455 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.54 | 47.0 | 3.13e-01 | 100.0% | 47.9% |
| 5041097 | 6043.1.1.0 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like | 0.54 | 34.0 | 3.61e-01 | 72.3% | 74.5% |
| 3672217 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.54 | 44.0 | 3.90e-01 | 95.4% | 84.0% |
| 1720190 | 331.20.1.1 ↗ | a+b two layers › TBP-like › Curlin genes transcriptional regulator › Curlin genes transcriptional regulator › Crl | 0.53 | 41.0 | 3.35e-01 | 95.4% | 43.6% |
| 4993106 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.52 | 37.0 | 2.55e-01 | 73.8% | 88.2% |
| 3232364 | 3335.1.1.0 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B | 0.52 | 39.0 | 4.00e-01 | 81.5% | 96.9% |
| 3702659 | 2.1.1.92 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_D_N | 0.51 | 38.0 | 3.12e-01 | 84.6% | 85.7% |
| 3292092 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.51 | 38.0 | 3.06e-01 | 83.1% | 91.8% |
| 3838430 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.51 | 38.0 | 3.21e-01 | 80.0% | 61.9% |