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IMGVR_UViG_3300033178_000008-3300033178-Ga0334885_10011333
Arc-VirIMGVR_UViG_3300033178_000008-3300033178-Ga0334885_10011333
Identity
- Kingdom:
- archaea
Quality
71.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-48
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wiiA01 | 2.20.25.190 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.74 | 50.0 | 4.59e-01 | 82.6% | 53.2% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.71 | 57.0 | 4.31e-01 | 93.5% | 38.0% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.71 | 56.0 | 4.75e-01 | 91.3% | 59.0% |
| 2vszB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.70 | 55.0 | 4.22e-01 | 93.5% | 52.1% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.69 | 58.0 | 4.74e-01 | 100.0% | 51.6% |
| 2gpiA00 | 3.30.160.140 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Shew3726-like | 0.62 | 46.0 | 3.77e-01 | 82.6% | 51.6% |
| 7cr6D01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.62 | 46.0 | 3.97e-01 | 100.0% | 48.8% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.61 | 50.0 | 3.45e-01 | 95.7% | 27.9% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 41.0 | 3.19e-01 | 76.1% | 31.4% |
| 6yiiA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.59 | 41.0 | 2.71e-01 | 78.3% | 76.1% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.58 | 46.0 | 3.09e-01 | 95.7% | 38.9% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.57 | 43.0 | 2.94e-01 | 87.0% | 73.6% |
| 3id6A01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.57 | 47.0 | 3.72e-01 | 97.8% | 79.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 42.0 | 3.47e-01 | 84.8% | 69.1% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 44.0 | 3.50e-01 | 91.3% | 40.8% |
| 2vnuD04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 3.86e-01 | 95.7% | 78.5% |
| 4qt4A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.54 | 43.0 | 3.05e-01 | 100.0% | 46.6% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 46.0 | 3.62e-01 | 95.7% | 58.9% |
| 4aqlA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.54 | 45.0 | 3.32e-01 | 100.0% | 43.5% |
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.54 | 45.0 | 3.13e-01 | 97.8% | 46.5% |
| 1bcoA02 | 2.30.30.130 | Mainly Beta › Roll › SH3 type barrels. › Transposase, Mu, C-terminal | 0.53 | 38.0 | 3.53e-01 | 82.6% | 86.8% |
| 4gj1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 41.0 | 2.72e-01 | 93.5% | 90.0% |
| 2y8tA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.51 | 34.0 | 3.35e-01 | 73.9% | 63.6% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032137 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.79 | 53.0 | 4.63e-01 | 82.6% | 47.1% |
| 4024503 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.77 | 63.0 | 5.30e-01 | 93.5% | 57.5% |
| 3798357 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 52.0 | 4.42e-01 | 82.6% | 44.0% |
| 4948153 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 53.0 | 4.61e-01 | 84.8% | 48.6% |
| 4956733 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.76 | 53.0 | 4.57e-01 | 84.8% | 48.6% |
| 3814126 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.73 | 63.0 | 5.21e-01 | 100.0% | 64.7% |
| 4090709 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.72 | 59.0 | 4.53e-01 | 93.5% | 91.7% |
| 3646226 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.71 | 54.0 | 4.53e-01 | 84.8% | 55.0% |
| 4933213 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.70 | 47.0 | 4.18e-01 | 82.6% | 47.1% |
| 5000498 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.69 | 59.0 | 5.51e-01 | 100.0% | 78.3% |
| 6543 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.69 | 50.0 | 4.56e-01 | 76.1% | 61.0% |
| 4028407 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.69 | 51.0 | 3.77e-01 | 84.8% | 30.8% |
| 4666011 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.69 | 58.0 | 4.94e-01 | 100.0% | 62.5% |
| 3213706 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.69 | 58.0 | 3.77e-01 | 100.0% | 24.5% |
| 3280385 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.68 | 53.0 | 5.04e-01 | 87.0% | 74.5% |
| 4225322 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.67 | 54.0 | 4.99e-01 | 97.8% | 70.8% |
| 3258706 | 812.1.1.0 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain | 0.66 | 47.0 | 3.53e-01 | 82.6% | 28.1% |
| 3576434 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 52.0 | 4.21e-01 | 100.0% | 45.7% |
| 5045955 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 55.0 | 3.57e-01 | 100.0% | 85.6% |
| 3926425 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.63 | 48.0 | 3.97e-01 | 93.5% | 47.0% |
| 3241191 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 51.0 | 3.88e-01 | 93.5% | 37.4% |
| 3740597 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.62 | 54.0 | 3.11e-01 | 100.0% | 45.2% |
| 4285602 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.62 | 50.0 | 3.71e-01 | 93.5% | 47.7% |
| 5059725 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.62 | 50.0 | 3.45e-01 | 95.7% | 28.3% |
| 5032561 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.61 | 49.0 | 3.94e-01 | 95.7% | 44.8% |
| 3969115 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.61 | 47.0 | 3.70e-01 | 89.1% | 42.9% |
| 4027686 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.60 | 46.0 | 4.37e-01 | 84.8% | 76.4% |
| 4027687 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.60 | 45.0 | 4.32e-01 | 84.8% | 74.5% |
| 4331898 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.60 | 45.0 | 3.61e-01 | 80.4% | 44.4% |
| 5081700 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.59 | 49.0 | 3.37e-01 | 93.5% | 58.2% |
| 4024768 | 330.3.1.7 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › AP2 | 0.59 | 45.0 | 4.29e-01 | 84.8% | 74.5% |
| 5037644 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.58 | 46.0 | 3.59e-01 | 95.7% | 38.3% |
| 4026211 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.58 | 44.0 | 4.37e-01 | 84.8% | 82.0% |
| 5029991 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.58 | 46.0 | 3.53e-01 | 93.5% | 46.4% |
| 3519842 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.58 | 49.0 | 3.32e-01 | 100.0% | 67.2% |
| 3164102 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.58 | 42.0 | 4.28e-01 | 84.8% | 82.2% |
| 184514 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.58 | 46.0 | 3.30e-01 | 95.7% | 51.9% |
| 5035011 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.58 | 48.0 | 3.13e-01 | 100.0% | 86.8% |
| 3252808 | 1170.1.2.0 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) | 0.58 | 49.0 | 4.24e-01 | 93.5% | 74.3% |
| 3882163 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 2.79e-01 | 89.1% | 17.6% |
| 3213262 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.56 | 50.0 | 3.88e-01 | 100.0% | 56.0% |
| 3943153 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.56 | 44.0 | 3.35e-01 | 93.5% | 50.0% |
| 5041315 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.56 | 44.0 | 3.67e-01 | 100.0% | 94.0% |
| 4944397 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 37.0 | 3.62e-01 | 76.1% | 60.0% |
| 3393985 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.54 | 39.0 | 3.50e-01 | 84.8% | 53.3% |
| 2332800 | 4059.1.1.0 ↗ | a+b complex topology › Serpins › Serpins › Serpins | 0.54 | 46.0 | 2.76e-01 | 95.7% | 16.3% |
| 3516793 | 101.1.2.197 ↗ | alpha arrays › HTH › HTH › winged helix domain › APAF-1-like_WHD | 0.52 | 42.0 | 3.36e-01 | 95.7% | 70.5% |
| 3212902 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.50 | 38.0 | 2.75e-01 | 89.1% | 94.4% |
| 3636596 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 34.0 | 3.45e-01 | 80.4% | 92.0% |