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IMGVR_UViG_3300033388_005792-3300033388-Ga0370355_100102422

Arc-Vir

IMGVR_UViG_3300033388_005792-3300033388-Ga0370355_100102422

Quality

79.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-61
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 47.0 3.70e-01 96.4% 33.6%
1szlA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.69 54.0 5.53e-01 96.4% 90.4%
1lslA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.65 54.0 5.40e-01 98.2% 89.3%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 47.0 3.32e-01 98.2% 24.2%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 4.17e-01 96.4% 56.4%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 42.0 3.85e-01 98.2% 52.0%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 46.0 3.69e-01 98.2% 39.1%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 42.0 3.21e-01 94.5% 28.9%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.58e-01 96.4% 43.8%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 45.0 3.67e-01 98.2% 42.7%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 3.76e-01 92.7% 49.1%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.69e-01 96.4% 52.4%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 42.0 3.53e-01 90.9% 43.3%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.83e-01 92.7% 52.5%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 38.0 3.09e-01 100.0% 31.7%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.31e-01 100.0% 36.0%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.11e-01 83.6% 34.7%
6hpvA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.72e-01 98.2% 54.8%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.56 39.0 4.13e-01 83.6% 89.1%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 44.0 3.31e-01 100.0% 37.5%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 3.81e-01 94.5% 56.0%
3v9oA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.55 37.0 2.92e-01 72.7% 32.2%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 36.0 2.99e-01 89.1% 33.1%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.54 43.0 3.35e-01 98.2% 39.2%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 43.0 3.44e-01 100.0% 42.4%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 3.71e-01 98.2% 58.0%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.54 38.0 3.05e-01 100.0% 32.6%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 45.0 3.32e-01 94.5% 79.3%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 42.0 2.71e-01 96.4% 85.7%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 3.51e-01 96.4% 98.2%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 44.0 2.90e-01 100.0% 40.4%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.38e-01 96.4% 45.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.38e-01 92.7% 51.5%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.50 41.0 3.18e-01 100.0% 41.3%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 36.0 2.90e-01 89.1% 36.1%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3899620 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.79 66.0 6.37e-01 100.0% 81.7%
3760912 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.75 62.0 6.47e-01 100.0% 96.0%
3932870 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.75 63.0 6.37e-01 98.2% 90.9%
3913930 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.74 61.0 6.13e-01 98.2% 87.3%
3888231 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.74 61.0 6.42e-01 98.2% 96.0%
3239665 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.74 59.0 6.18e-01 98.2% 96.0%
4233592 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.73 59.0 6.16e-01 98.2% 94.0%
3849861 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.72 59.0 6.21e-01 100.0% 98.0%
3769622 922.1.1.35 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1, TSP1_spondin, TSP1_ADAMTS 0.71 59.0 3.76e-01 100.0% 20.4%
3907093 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.71 58.0 5.83e-01 100.0% 87.3%
3878727 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.71 59.0 5.62e-01 98.2% 76.9%
3416749 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.70 57.0 6.01e-01 96.4% 96.0%
3411811 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.70 58.0 5.85e-01 98.2% 89.1%
3226890 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.69 55.0 5.72e-01 94.5% 94.0%
3565166 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.69 61.0 4.09e-01 100.0% 25.8%
3915731 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.68 61.0 4.37e-01 98.2% 36.0%
3578057 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.68 58.0 5.83e-01 96.4% 90.9%
4577892 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.68 52.0 5.46e-01 90.9% 91.8%
3573308 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.68 57.0 5.71e-01 100.0% 89.1%
3858016 922.1.1.27 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin, TSP1_ADAMTS 0.68 54.0 4.08e-01 92.7% 37.6%
3938148 922.1.1.4 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › CFP_C_TSP1 0.67 57.0 5.76e-01 98.2% 90.9%
3529346 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.67 59.0 5.78e-01 98.2% 95.0%
3239695 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.66 58.0 5.82e-01 100.0% 94.5%
3234678 922.1.1.4 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › CFP_C_TSP1 0.65 53.0 5.60e-01 98.2% 96.0%
3931528 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.65 57.0 5.71e-01 100.0% 94.5%
3242841 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.65 53.0 5.39e-01 92.7% 87.3%
3241129 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.65 55.0 5.55e-01 98.2% 92.7%
3749122 5.1.3.176 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N 0.64 51.0 3.07e-01 98.2% 12.5%
3547533 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.63 55.0 5.43e-01 100.0% 87.9%
3619988 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.63 52.0 5.28e-01 94.5% 87.3%
3930136 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.63 54.0 5.43e-01 100.0% 92.7%
3396100 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.63 54.0 5.30e-01 94.5% 96.7%
3512104 922.1.1.9 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 0.62 52.0 5.23e-01 94.5% 90.9%
3201142 223.2.1.25 a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.62 48.0 3.86e-01 87.3% 48.7%
3907924 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.62 54.0 5.46e-01 100.0% 98.2%
3284948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 50.0 4.43e-01 100.0% 61.2%
3630651 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.61 53.0 5.37e-01 98.2% 96.4%
3748835 922.1.1.25 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1, TSP1_CFP_C 0.60 51.0 4.44e-01 94.5% 88.2%
2533778 922.1.1.4 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › CFP_C_TSP1 0.60 51.0 4.10e-01 92.7% 72.5%
4071974 922.1.1.25 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1, TSP1_CFP_C 0.60 54.0 3.92e-01 100.0% 38.0%
3912815 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.59 51.0 5.13e-01 100.0% 100.0%
3672422 223.1.1.8 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE 0.58 50.0 3.15e-01 96.4% 64.1%
317 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.58 45.0 3.76e-01 92.7% 49.1%
4068016 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.57 46.0 3.84e-01 96.4% 48.6%
4146812 9.4.1.4 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 0.57 48.0 3.57e-01 100.0% 44.5%
3623100 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.57 52.0 5.09e-01 100.0% 91.7%
3613735 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.57 46.0 3.33e-01 100.0% 36.4%
3667392 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 45.0 3.63e-01 90.9% 45.2%
3880751 922.1.1.4 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › CFP_C_TSP1 0.55 47.0 4.24e-01 94.5% 82.7%
4264144 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.55 42.0 3.60e-01 92.7% 47.6%
3796739 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 45.0 4.10e-01 98.2% 77.5%
3840079 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.54 42.0 3.25e-01 98.2% 34.0%
3267804 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 3.72e-01 96.4% 52.0%
3850124 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.54 43.0 2.97e-01 90.9% 29.8%
3635512 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 44.0 3.21e-01 92.7% 33.5%
4327241 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.53 40.0 3.51e-01 90.9% 54.1%
5035575 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.71e-01 96.4% 63.8%
3655402 2.1.1.266 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30826 0.53 42.0 3.30e-01 96.4% 46.4%
3724413 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.45e-01 100.0% 70.4%
381191 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.51 39.0 3.38e-01 92.7% 51.5%
3595828 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.51 41.0 3.11e-01 100.0% 80.4%
3858018 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.51 44.0 3.37e-01 100.0% 83.7%
3544631 922.1.1.5 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.50 42.0 4.16e-01 100.0% 90.0%
3550168 4.8.1.27 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N 0.50 42.0 3.66e-01 98.2% 62.2%
3880555 2.1.1.290 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29066 0.50 39.0 3.12e-01 96.4% 45.7%
3798423 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 41.0 3.23e-01 96.4% 48.5%