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IMGVR_UViG_3300033388_008252-3300033388-Ga0370355_10581651
Arc-VirIMGVR_UViG_3300033388_008252-3300033388-Ga0370355_10581651
Identity
- Kingdom:
- archaea
Quality
82.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-139
Domain cluster:
rep: IMGVR_UViG_3300016781_000872-3300016781-Ga0182063_12070722__D702-796
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24517.3 best | CBM96 | 26.2 | 8.90e-06 | 90.5% | 60.4% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ikuA01 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 31.0 | 3.41e-01 | 96.9% | 65.4% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 30.0 | 3.33e-01 | 92.1% | 66.7% |
| 2lfeA00 | 2.60.40.2840 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 29.0 | 3.11e-01 | 76.4% | 60.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5056076 | 10.2.1.75 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 | 0.87 | 83.0 | 7.01e-01 | 100.0% | 65.8% |
| 4970100 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.84 | 77.0 | 6.71e-01 | 96.1% | 68.6% |
| 5020663 | 10.2.1.104 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat | 0.78 | 74.0 | 4.63e-01 | 99.2% | 24.3% |
| 4984620 | 10.2.1.104 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat | 0.78 | 74.0 | 6.32e-01 | 99.2% | 68.9% |
| 5002813 | 10.2.1.104 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat | 0.78 | 74.0 | 6.08e-01 | 99.2% | 65.2% |
| 3413783 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 26.0 | 2.85e-01 | 77.2% | 57.0% |