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IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036197

Arc-Vir

IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036197

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-72
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 49.0 2.98e-01 72.2% 21.6%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 35.0 3.46e-01 88.9% 45.3%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.69 60.0 4.18e-01 97.2% 36.4%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.68 57.0 4.88e-01 94.4% 89.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.67 47.0 4.39e-01 72.2% 93.2%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.66 57.0 4.75e-01 98.6% 80.8%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 57.0 4.29e-01 100.0% 38.3%
3ffvA00 3.40.1580.20 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Syd protein 0.65 47.0 3.53e-01 76.4% 35.4%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.63 51.0 4.39e-01 87.5% 66.1%
1n3hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.13e-01 72.2% 69.1%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 39.0 3.06e-01 84.7% 29.5%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 48.0 3.27e-01 87.5% 53.6%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.61 42.0 4.26e-01 87.5% 71.2%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 51.0 3.33e-01 93.1% 87.8%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 42.0 2.84e-01 73.6% 57.1%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.60 49.0 3.08e-01 90.3% 41.4%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.59 41.0 4.48e-01 83.3% 91.4%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.59 49.0 3.67e-01 95.8% 81.2%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.59 46.0 2.87e-01 88.9% 43.2%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 51.0 3.12e-01 97.2% 82.6%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.58 46.0 3.98e-01 87.5% 61.3%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.03e-01 95.8% 96.1%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.58 44.0 3.67e-01 84.7% 87.5%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 50.0 3.17e-01 97.2% 83.7%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.57 49.0 3.32e-01 100.0% 88.3%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 47.0 3.19e-01 93.1% 94.9%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 42.0 2.74e-01 77.8% 16.9%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.57 45.0 3.81e-01 90.3% 75.9%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.19e-01 100.0% 82.7%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 41.0 3.57e-01 77.8% 62.7%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 47.0 4.12e-01 91.7% 76.1%
3dr2A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 47.0 3.25e-01 98.6% 71.2%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 50.0 3.50e-01 100.0% 41.5%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 46.0 3.94e-01 94.4% 53.2%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.56 48.0 3.92e-01 98.6% 93.8%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.56 44.0 3.82e-01 84.7% 73.0%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.18e-01 98.6% 91.7%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 43.0 2.91e-01 94.4% 22.7%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.75e-01 94.4% 88.6%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.88e-01 100.0% 74.6%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 45.0 3.09e-01 93.1% 95.1%
7u6rA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.54 45.0 3.17e-01 98.6% 65.3%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.53 45.0 3.48e-01 95.8% 74.0%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.68e-01 100.0% 75.0%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 47.0 3.39e-01 98.6% 42.2%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 44.0 4.24e-01 97.2% 86.7%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 36.0 2.47e-01 73.6% 18.6%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 45.0 3.50e-01 100.0% 85.2%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.78e-01 100.0% 93.8%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.19e-01 97.2% 77.4%
3fhlA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 2.89e-01 80.6% 55.4%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.63e-01 100.0% 73.3%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 42.0 2.95e-01 100.0% 70.5%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.62e-01 95.8% 81.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389684 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.74 51.0 3.19e-01 70.8% 82.3%
3207028 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.74 51.0 3.15e-01 72.2% 19.0%
4951147 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.72 50.0 4.20e-01 72.2% 43.3%
3929729 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.72 48.0 3.52e-01 72.2% 25.6%
3736378 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.71 50.0 3.01e-01 72.2% 17.0%
3991137 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.70 48.0 3.05e-01 70.8% 48.2%
3489732 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 47.0 4.12e-01 72.2% 63.6%
3925754 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 44.0 3.62e-01 72.2% 36.3%
3661480 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.67 48.0 3.07e-01 76.4% 65.6%
3711668 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.67 48.0 4.54e-01 83.3% 62.2%
3427234 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 58.0 3.99e-01 97.2% 51.0%
4019192 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.66 49.0 3.69e-01 77.8% 100.0%
4943724 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 50.0 3.17e-01 80.6% 23.7%
7384 219.1.1.21 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.66 57.0 4.29e-01 100.0% 38.3%
4492832 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.65 45.0 3.46e-01 70.8% 71.0%
3620679 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 57.0 4.20e-01 97.2% 43.2%
3246551 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.65 55.0 3.43e-01 94.4% 21.7%
3495619 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.64 44.0 3.82e-01 70.8% 60.9%
5069827 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.64 52.0 3.28e-01 88.9% 91.6%
3616213 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 48.0 3.16e-01 79.2% 75.6%
4350703 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.64 45.0 3.92e-01 75.0% 76.4%
3404845 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.63 43.0 3.97e-01 70.8% 70.5%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.63 52.0 5.27e-01 94.4% 94.3%
4961310 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.63 50.0 3.36e-01 87.5% 53.1%
5081122 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.63 48.0 4.32e-01 81.9% 72.0%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.63 45.0 4.06e-01 91.7% 54.0%
3612587 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.63 43.0 4.60e-01 80.6% 85.0%
3533183 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 42.0 3.83e-01 70.8% 65.0%
4106342 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 42.0 3.97e-01 70.8% 76.7%
3422058 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.62 47.0 3.22e-01 81.9% 57.7%
3496370 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 42.0 3.50e-01 70.8% 53.1%
3652949 5.1.5.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.62 43.0 2.82e-01 70.8% 63.3%
4030008 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 3.07e-01 83.3% 67.6%
3238801 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 50.0 3.07e-01 90.3% 15.1%
3228484 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 45.0 3.18e-01 94.4% 23.1%
3939076 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 41.0 3.73e-01 70.8% 63.0%
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.60 50.0 4.73e-01 94.4% 84.1%
5074419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.60 46.0 4.79e-01 87.5% 92.3%
3239485 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 48.0 4.00e-01 90.3% 50.0%
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.59 50.0 4.88e-01 95.8% 88.7%
3172856 5.1.4.575 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.59 52.0 3.47e-01 97.2% 83.2%
5030040 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 50.0 3.40e-01 95.8% 81.1%
3283531 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.59 45.0 3.17e-01 86.1% 75.7%
4950750 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.58 51.0 3.55e-01 100.0% 44.8%
4947870 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.58 50.0 3.67e-01 100.0% 96.6%
5074119 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.58 50.0 3.56e-01 100.0% 91.9%
3552839 11.1.1.795 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA 0.57 46.0 3.99e-01 86.1% 64.5%
4958522 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 42.0 4.38e-01 79.2% 87.7%
3281283 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.57 47.0 3.17e-01 93.1% 89.8%
4026020 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.19e-01 98.6% 94.5%
3254948 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 38.0 2.72e-01 70.8% 26.0%
3575677 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.55 42.0 3.19e-01 87.5% 66.0%
3943609 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.55 45.0 3.11e-01 97.2% 94.8%
3260205 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.54 43.0 2.90e-01 93.1% 44.7%
3164205 813.1.1.3 a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_3 0.53 40.0 3.35e-01 86.1% 82.8%
3737620 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.53 43.0 2.68e-01 95.8% 55.8%
3215166 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.53 42.0 3.84e-01 87.5% 68.4%
3496419 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.51e-01 100.0% 30.1%
3229131 5.1.5.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.52 43.0 2.97e-01 97.2% 82.5%
3941928 3822.1.1.1 alpha complex topology › Intergenic-region protein › Intergenic-region protein › Intergenic-region protein › Antirestrict 0.52 39.0 3.20e-01 79.2% 78.4%
None 0.51 41.0 2.95e-01 98.6% 82.5%
3994644 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.46e-01 100.0% 47.3%