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IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036250

Arc-Vir

IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036250

Identity

Kingdom:
archaea

Quality

85.2 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-82
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.65 48.0 3.24e-01 80.6% 47.2%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 38.0 2.36e-01 71.0% 65.6%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.55 37.0 2.73e-01 71.0% 26.5%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 45.0 3.55e-01 98.4% 82.4%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.55 41.0 2.84e-01 83.9% 72.8%
1gteA04 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 2.96e-01 95.2% 30.7%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.54 44.0 3.08e-01 96.8% 59.2%
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 45.0 3.02e-01 100.0% 51.4%
4pt4B00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.53 36.0 3.18e-01 71.0% 53.6%
5c4iE01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.53 36.0 2.55e-01 71.0% 24.3%
4iu2B01 2.60.40.3810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.13e-01 77.4% 78.6%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 36.0 3.07e-01 74.2% 42.7%
1io1A02 2.170.280.10 Mainly Beta › Beta Complex › f41 fragment of flagellin, middle domain › f41 fragment of flagellin, middle domain 0.52 36.0 2.88e-01 72.6% 38.9%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.04e-01 75.8% 46.2%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 36.0 2.76e-01 75.8% 35.3%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 36.0 2.97e-01 75.8% 73.2%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 36.0 2.63e-01 79.0% 92.5%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.03e-01 87.1% 39.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968270 3103.1.1.2 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_13 0.64 43.0 3.57e-01 72.6% 40.0%
4019088 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 48.0 3.29e-01 90.3% 66.2%
4255094 304.28.1.35 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Amnionless 0.59 41.0 3.39e-01 75.8% 40.9%
3791563 5.1.2.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF7911 0.57 49.0 3.22e-01 100.0% 58.0%
4929428 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.56 37.0 3.37e-01 71.0% 50.6%
5050420 324.1.1.0 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like 0.55 37.0 3.08e-01 71.0% 39.2%
5043596 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.53 37.0 3.06e-01 75.8% 40.0%
5879 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.52 39.0 3.04e-01 82.3% 71.2%
3484741 5.1.4.303 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.52 42.0 2.71e-01 95.2% 35.3%
5038748 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 37.0 2.97e-01 75.8% 43.3%
4474711 3747.1.1.2 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.51 36.0 3.18e-01 77.4% 52.4%
3614118 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 35.0 2.11e-01 74.2% 51.0%
3243866 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 35.0 3.09e-01 74.2% 65.0%
4938355 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 36.0 2.78e-01 75.8% 37.2%
3472190 2492.1.1.4 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.51 39.0 2.70e-01 98.4% 91.1%
3853833 304.9.1.81 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A 0.51 36.0 2.79e-01 77.4% 85.5%
3608759 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 34.0 3.15e-01 71.0% 67.1%
4020443 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.50 35.0 2.95e-01 83.9% 39.0%