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IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036260
Arc-VirIMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036260
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-90
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14393.12 best | DUF4422 | 68.5 | 1.10e-18 | 93.3% | 30.4% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xhbA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.64 | 57.0 | 4.15e-01 | 100.0% | 46.9% |
| 1yqeA01 | 3.40.630.50 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like | 0.58 | 48.0 | 3.84e-01 | 93.3% | 97.8% |
| 1dp4A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 50.0 | 3.86e-01 | 100.0% | 97.2% |
| 6ejiA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.56 | 48.0 | 3.91e-01 | 100.0% | 100.0% |
| 3ej7H00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 28.0 | 3.38e-01 | 71.9% | 79.6% |
| 4kavA00 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.53 | 45.0 | 3.13e-01 | 96.6% | 67.4% |
| 4uuwA01 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.53 | 45.0 | 3.70e-01 | 95.5% | 95.9% |
| 4jmjA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 37.0 | 2.99e-01 | 73.0% | 38.1% |
| 3ej3C00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 28.0 | 3.20e-01 | 71.9% | 68.8% |
| 3lxqA02 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.53 | 45.0 | 3.23e-01 | 97.8% | 62.0% |
| 3m21F00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 29.0 | 3.30e-01 | 71.9% | 70.1% |
| 7pthC01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.52 | 44.0 | 2.87e-01 | 97.8% | 78.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979190 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.57 | 48.0 | 3.37e-01 | 97.8% | 92.1% |
| 5055248 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.57 | 46.0 | 3.64e-01 | 92.1% | 95.7% |
| 3512459 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.55 | 41.0 | 3.24e-01 | 82.0% | 72.9% |
| 4995506 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.55 | 47.0 | 3.43e-01 | 98.9% | 78.2% |
| 3725576 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.55 | 39.0 | 3.10e-01 | 74.2% | 38.4% |
| 3786806 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.55 | 49.0 | 4.92e-01 | 100.0% | 100.0% |
| 4930658 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.52 | 37.0 | 3.17e-01 | 75.3% | 83.7% |
| 3483244 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.52 | 35.0 | 2.80e-01 | 74.2% | 32.3% |
| 4171287 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.52 | 39.0 | 2.94e-01 | 82.0% | 74.1% |
| 3262635 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.50 | 35.0 | 2.94e-01 | 73.0% | 41.3% |
| 3259936 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.50 | 35.0 | 2.85e-01 | 74.2% | 36.6% |
D2
high
residues 94-206
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14393.12 best | DUF4422 | 47.8 | 2.30e-12 | 91.1% | 40.5% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yvkA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.60 | 37.0 | 3.37e-01 | 78.8% | 45.3% |
| 1zkrB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.54 | 40.0 | 3.75e-01 | 78.8% | 91.7% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.50 | 33.0 | 3.40e-01 | 78.8% | 69.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4520167 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 45.0 | 4.89e-01 | 82.3% | 91.6% |
| 5028331 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.60 | 37.0 | 4.03e-01 | 91.2% | 72.6% |
| 5062324 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.56 | 44.0 | 3.76e-01 | 87.6% | 84.0% |
| 3709370 | 586.1.1.0 ↗ | extended segments › Stathmin › Stathmin › Stathmin | 0.55 | 41.0 | 3.61e-01 | 92.9% | 51.4% |
| 4029967 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.54 | 36.0 | 3.63e-01 | 88.5% | 67.0% |
| 4196844 | 109.46.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH | 0.53 | 29.0 | 2.58e-01 | 81.4% | 33.1% |
| 3924719 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.52 | 38.0 | 4.08e-01 | 86.7% | 91.6% |
| 3600865 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.51 | 34.0 | 3.00e-01 | 92.9% | 44.7% |
| 3610147 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.51 | 33.0 | 2.96e-01 | 92.9% | 45.1% |
| 3677809 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.51 | 38.0 | 3.54e-01 | 78.8% | 76.6% |
| 3415904 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.51 | 36.0 | 3.84e-01 | 85.0% | 88.4% |
| 185273 | 3486.1.1.0 ↗ | alpha bundles › Integron gene cassette protein HFX_CASS2-like › Integron gene cassette protein HFX_CASS2 › Integron gene cassette protein HFX_CASS2 | 0.50 | 36.0 | 3.72e-01 | 79.6% | 77.5% |