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IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036300
Arc-VirIMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036300
Identity
- Kingdom:
- archaea
Quality
85.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-131
Domain cluster:
representative
CATH (66)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.72 | 61.0 | 4.43e-01 | 100.0% | 94.0% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.71 | 54.0 | 5.16e-01 | 87.3% | 69.7% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.70 | 60.0 | 5.15e-01 | 100.0% | 96.7% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 62.0 | 5.08e-01 | 100.0% | 58.8% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.68 | 61.0 | 4.71e-01 | 100.0% | 82.5% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.67 | 52.0 | 4.56e-01 | 85.5% | 91.6% |
| 2rftA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.66 | 51.0 | 3.33e-01 | 85.5% | 37.7% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.66 | 51.0 | 4.14e-01 | 87.3% | 47.7% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.66 | 54.0 | 4.71e-01 | 100.0% | 72.3% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.65 | 50.0 | 4.20e-01 | 85.5% | 56.1% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.65 | 50.0 | 4.24e-01 | 87.3% | 61.5% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.65 | 48.0 | 4.95e-01 | 87.3% | 92.0% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 48.0 | 4.42e-01 | 85.5% | 72.4% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.63 | 49.0 | 3.99e-01 | 87.3% | 58.7% |
| 2pjyC00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.62 | 48.0 | 4.42e-01 | 90.9% | 68.4% |
| 6b9tF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 44.0 | 3.58e-01 | 98.2% | 38.5% |
| 2eddA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 53.0 | 4.28e-01 | 100.0% | 50.0% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 48.0 | 3.82e-01 | 87.3% | 56.8% |
| 3zx7A01 | 2.60.120.980 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 41.0 | 2.99e-01 | 72.7% | 59.7% |
| 4ccjA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.60 | 51.0 | 3.39e-01 | 100.0% | 30.5% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.60 | 40.0 | 3.11e-01 | 70.9% | 31.0% |
| 2dliA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 51.0 | 4.29e-01 | 100.0% | 62.2% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 46.0 | 3.70e-01 | 89.1% | 57.1% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.59 | 47.0 | 3.53e-01 | 100.0% | 58.1% |
| 1d0nA02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.58 | 42.0 | 3.48e-01 | 78.2% | 79.1% |
| 2hpuA02 | 3.30.70.2050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 51.0 | 4.91e-01 | 100.0% | 88.9% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 49.0 | 3.40e-01 | 100.0% | 37.1% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 47.0 | 4.09e-01 | 100.0% | 72.9% |
| 1dleB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 48.0 | 3.70e-01 | 100.0% | 63.4% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.57 | 47.0 | 3.88e-01 | 96.4% | 81.7% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 50.0 | 3.87e-01 | 100.0% | 47.6% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.57 | 47.0 | 4.39e-01 | 100.0% | 73.7% |
| 3ec6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 48.0 | 3.74e-01 | 100.0% | 50.0% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 47.0 | 4.14e-01 | 100.0% | 62.4% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 47.0 | 3.60e-01 | 98.2% | 97.1% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 47.0 | 3.26e-01 | 100.0% | 32.0% |
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.56 | 44.0 | 2.89e-01 | 100.0% | 32.2% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.56 | 41.0 | 2.94e-01 | 80.0% | 95.8% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.55 | 49.0 | 3.89e-01 | 100.0% | 58.9% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.55 | 41.0 | 3.15e-01 | 100.0% | 32.9% |
| 1uijB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 47.0 | 3.41e-01 | 100.0% | 33.9% |
| 4q0jA03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.55 | 37.0 | 2.82e-01 | 70.9% | 40.8% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 44.0 | 2.90e-01 | 100.0% | 32.6% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 47.0 | 3.48e-01 | 98.2% | 49.3% |
| 7pupA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 37.0 | 2.61e-01 | 87.3% | 19.1% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 45.0 | 3.65e-01 | 98.2% | 53.4% |
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 41.0 | 3.26e-01 | 85.5% | 47.5% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.54 | 47.0 | 3.77e-01 | 100.0% | 60.2% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.54 | 39.0 | 2.81e-01 | 80.0% | 96.6% |
| 1dyqA02 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 43.0 | 3.40e-01 | 98.2% | 74.6% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 43.0 | 2.80e-01 | 96.4% | 36.3% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 41.0 | 3.40e-01 | 87.3% | 57.5% |
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 43.0 | 3.45e-01 | 100.0% | 72.2% |
| 4o9gA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 40.0 | 3.05e-01 | 94.5% | 31.9% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 40.0 | 2.53e-01 | 89.1% | 77.6% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 40.0 | 3.35e-01 | 85.5% | 68.3% |
| 2ok5A02 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 44.0 | 3.04e-01 | 100.0% | 25.1% |
| 2hq9B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 43.0 | 3.40e-01 | 100.0% | 47.4% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 44.0 | 3.48e-01 | 100.0% | 51.6% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 46.0 | 3.30e-01 | 100.0% | 40.0% |
| 1te5A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 41.0 | 2.83e-01 | 100.0% | 70.0% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 43.0 | 3.08e-01 | 98.2% | 56.5% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.52 | 40.0 | 3.72e-01 | 90.9% | 72.7% |
| 1l3lA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.51 | 40.0 | 2.90e-01 | 87.3% | 95.9% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 42.0 | 3.06e-01 | 98.2% | 59.0% |
| 1w99A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 41.0 | 2.95e-01 | 98.2% | 40.3% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.86 | 78.0 | 6.96e-01 | 100.0% | 76.0% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.70 | 47.0 | 4.58e-01 | 89.1% | 63.3% |
| 3414064 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.70 | 47.0 | 4.72e-01 | 87.3% | 69.1% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 53.0 | 5.09e-01 | 85.5% | 85.9% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 53.0 | 5.35e-01 | 85.5% | 96.4% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.68 | 52.0 | 5.58e-01 | 90.9% | 100.0% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.68 | 53.0 | 5.19e-01 | 85.5% | 93.2% |
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.68 | 55.0 | 5.72e-01 | 87.3% | 96.0% |
| 3833740 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.68 | 49.0 | 2.79e-01 | 76.4% | 12.5% |
| 2028252 | 3986.2.1.1 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › Dmd | 0.68 | 57.0 | 5.50e-01 | 100.0% | 87.5% |
| 4959407 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.68 | 52.0 | 5.38e-01 | 89.1% | 94.0% |
| 3346510 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.67 | 48.0 | 2.75e-01 | 76.4% | 11.4% |
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.67 | 52.0 | 5.48e-01 | 85.5% | 92.0% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.67 | 52.0 | 5.42e-01 | 85.5% | 100.0% |
| 3830169 | 109.4.1.1383 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif | 0.67 | 48.0 | 2.67e-01 | 76.4% | 8.8% |
| 3320698 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.67 | 46.0 | 2.63e-01 | 72.7% | 9.2% |
| 3390562 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.67 | 53.0 | 4.96e-01 | 89.1% | 74.3% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.67 | 50.0 | 5.38e-01 | 81.8% | 97.8% |
| 4212253 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.67 | 46.0 | 3.96e-01 | 74.5% | 90.3% |
| 3684103 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.66 | 52.0 | 2.98e-01 | 87.3% | 13.2% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.66 | 50.0 | 5.34e-01 | 89.1% | 100.0% |
| 3917143 | 304.100.1.0 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like | 0.66 | 50.0 | 4.91e-01 | 81.8% | 98.3% |
| 3462080 | 109.4.1.1383 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif | 0.66 | 47.0 | 2.85e-01 | 76.4% | 16.4% |
| 3968768 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 50.0 | 4.50e-01 | 81.8% | 98.7% |
| 4327417 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.66 | 51.0 | 4.10e-01 | 87.3% | 49.6% |
| 3333061 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.66 | 47.0 | 2.68e-01 | 76.4% | 9.7% |
| 3830691 | 109.4.1.2337 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif, TPR_24 | 0.66 | 47.0 | 2.72e-01 | 76.4% | 11.8% |
| 3371469 | 109.4.1.3022 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif, TPR_24 | 0.66 | 47.0 | 2.71e-01 | 78.2% | 10.2% |
| 3420651 | 109.4.1.1521 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif | 0.66 | 47.0 | 2.88e-01 | 76.4% | 20.0% |
| 5000686 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.65 | 56.0 | 3.58e-01 | 100.0% | 77.9% |
| 3339265 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.65 | 47.0 | 2.63e-01 | 76.4% | 10.2% |
| 3817532 | 109.4.1.2179 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase, E_motif | 0.65 | 46.0 | 2.61e-01 | 74.5% | 10.2% |
| 3440323 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.65 | 46.0 | 2.62e-01 | 76.4% | 9.6% |
| 3330581 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.65 | 46.0 | 2.53e-01 | 76.4% | 7.2% |
| 3829044 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.65 | 46.0 | 2.91e-01 | 76.4% | 23.1% |
| 3679318 | 109.4.1.1992 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.65 | 46.0 | 2.64e-01 | 76.4% | 11.1% |
| 3802293 | 109.4.1.2064 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif, TPR_24 | 0.64 | 46.0 | 2.76e-01 | 76.4% | 15.3% |
| 4020546 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 50.0 | 3.85e-01 | 87.3% | 44.6% |
| 3681440 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.64 | 46.0 | 2.64e-01 | 76.4% | 12.3% |
| 5034119 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 44.0 | 3.03e-01 | 72.7% | 43.5% |
| 3434775 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.64 | 45.0 | 2.58e-01 | 76.4% | 9.0% |
| 3678845 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.63 | 45.0 | 2.57e-01 | 76.4% | 10.1% |
| 3419226 | 109.4.1.3173 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase, Eplus_motif, E_motif | 0.63 | 43.0 | 2.67e-01 | 72.7% | 16.5% |
| 5075402 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.63 | 52.0 | 3.36e-01 | 98.2% | 78.6% |
| 3322667 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.62 | 44.0 | 2.41e-01 | 76.4% | 6.7% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.62 | 45.0 | 4.83e-01 | 78.2% | 97.8% |
| 3802543 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.61 | 44.0 | 2.52e-01 | 76.4% | 10.6% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.61 | 52.0 | 5.10e-01 | 100.0% | 91.7% |
| 3825377 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.61 | 43.0 | 2.44e-01 | 76.4% | 9.9% |
| 3656048 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.60 | 46.0 | 2.51e-01 | 83.6% | 30.5% |
| 3446121 | 109.4.1.3478 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 | 0.60 | 41.0 | 2.36e-01 | 72.7% | 8.8% |
| 3348902 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.60 | 43.0 | 2.47e-01 | 76.4% | 11.4% |
| 3834151 | 109.4.1.3495 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, PPR_long, E_motif, TPR_24 | 0.60 | 43.0 | 2.55e-01 | 78.2% | 12.6% |
| 3739303 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.60 | 48.0 | 3.80e-01 | 90.9% | 51.7% |
| 3443843 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.60 | 47.0 | 2.71e-01 | 89.1% | 14.2% |
| 3435214 | 109.4.1.2064 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif, TPR_24 | 0.59 | 45.0 | 2.57e-01 | 83.6% | 43.8% |
| 4946228 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 41.0 | 3.12e-01 | 72.7% | 90.8% |
| 3651007 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.59 | 44.0 | 2.50e-01 | 81.8% | 48.0% |
| 3802249 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.59 | 46.0 | 2.65e-01 | 85.5% | 11.6% |
| 3307205 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.59 | 51.0 | 3.96e-01 | 100.0% | 80.8% |
| 3517637 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.59 | 49.0 | 3.26e-01 | 100.0% | 26.8% |
| 3818971 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.58 | 43.0 | 2.48e-01 | 81.8% | 45.3% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 50.0 | 4.81e-01 | 98.2% | 100.0% |
| 3321758 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.58 | 43.0 | 2.48e-01 | 81.8% | 43.0% |
| 3320990 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.58 | 44.0 | 2.51e-01 | 85.5% | 9.5% |
| 3645596 | 109.4.1.1476 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif | 0.56 | 47.0 | 2.67e-01 | 92.7% | 11.6% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.56 | 43.0 | 4.46e-01 | 85.5% | 98.0% |
| 3378740 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.56 | 45.0 | 2.46e-01 | 89.1% | 66.7% |
| 3627479 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.56 | 39.0 | 3.14e-01 | 87.3% | 33.6% |
| 3929515 | 382.1.1.21 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF28966 | 0.55 | 47.0 | 3.92e-01 | 100.0% | 76.2% |
| 3444049 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.55 | 48.0 | 2.74e-01 | 98.2% | 17.4% |
| 3356833 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.54 | 45.0 | 2.54e-01 | 92.7% | 18.4% |
| 3704468 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 45.0 | 3.69e-01 | 98.2% | 93.6% |
| 3651804 | 109.4.1.1520 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, E_motif | 0.54 | 47.0 | 2.75e-01 | 100.0% | 17.1% |
| 4596042 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.53 | 39.0 | 2.82e-01 | 81.8% | 92.4% |
| 3434515 | 109.4.1.2925 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, PPR_long, E_motif | 0.53 | 43.0 | 2.48e-01 | 100.0% | 17.7% |
| 3659725 | 109.4.1.1383 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif | 0.52 | 44.0 | 2.52e-01 | 98.2% | 14.3% |
| 3315113 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.52 | 42.0 | 2.76e-01 | 100.0% | 38.4% |
| 3793671 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.51 | 42.0 | 3.79e-01 | 100.0% | 94.1% |
| 3805667 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.50 | 44.0 | 2.46e-01 | 100.0% | 16.3% |
| 3829568 | 109.4.1.1383 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif | 0.50 | 40.0 | 2.38e-01 | 100.0% | 20.3% |
| 3379348 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.50 | 40.0 | 2.42e-01 | 100.0% | 19.2% |
D2
medium
residues 1-67
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 57.0 | 5.12e-01 | 73.1% | 53.8% |
| 1k04A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.80 | 65.0 | 5.54e-01 | 86.6% | 56.7% |
| 3vwaA03 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.75 | 52.0 | 3.34e-01 | 73.1% | 27.9% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 59.0 | 4.70e-01 | 88.1% | 44.1% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 55.0 | 4.71e-01 | 80.6% | 54.2% |
| 2vpzC00 | 1.20.1630.10 | Mainly Alpha › Up-down Bundle › Formate dehydrogenase/DMSO reductase fold › Formate dehydrogenase/DMSO reductase domain | 0.70 | 57.0 | 3.87e-01 | 89.6% | 48.4% |
| 4uelA02 | 1.20.58.860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 62.0 | 6.05e-01 | 100.0% | 93.1% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.64 | 49.0 | 3.80e-01 | 85.1% | 54.0% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.62 | 51.0 | 4.45e-01 | 98.5% | 72.8% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.60 | 46.0 | 4.31e-01 | 86.6% | 67.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2663455 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.82 | 60.0 | 6.05e-01 | 77.6% | 77.9% |
| 5048328 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.81 | 61.0 | 5.69e-01 | 80.6% | 66.3% |
| 4275409 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.77 | 60.0 | 5.02e-01 | 82.1% | 53.6% |
| 4206858 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.77 | 59.0 | 4.90e-01 | 82.1% | 51.3% |
| 3725456 | 604.3.1.24 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27980 | 0.74 | 52.0 | 4.78e-01 | 73.1% | 60.0% |
| 3841680 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.74 | 58.0 | 4.65e-01 | 85.1% | 80.0% |
| 3690916 | 604.5.1.51 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF27980 | 0.72 | 51.0 | 4.99e-01 | 74.6% | 68.0% |
| 3989542 | 2484.1.1.269 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 | 0.71 | 44.0 | 3.80e-01 | 70.1% | 41.0% |
| 4089826 | 622.1.1.33 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › T3SS_needle_F | 0.67 | 50.0 | 4.70e-01 | 82.1% | 67.1% |
| 3595675 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.62 | 52.0 | 3.74e-01 | 100.0% | 63.1% |