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IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036340

Arc-Vir

IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036340

Identity

Kingdom:
archaea

Quality

90.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-101
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.65 53.0 4.56e-01 91.4% 64.0%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 53.0 5.07e-01 95.7% 98.8%
2rqxA00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 53.0 5.06e-01 92.9% 98.8%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 50.0 4.23e-01 91.4% 62.8%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 52.0 4.08e-01 100.0% 77.9%
1p49A03 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 45.0 3.92e-01 82.9% 64.8%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.59 43.0 4.23e-01 94.3% 72.5%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 4.10e-01 100.0% 95.7%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 4.14e-01 100.0% 79.2%
2vnuD01 2.40.50.690 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 3.99e-01 95.7% 59.2%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.91e-01 100.0% 88.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 44.0 3.51e-01 84.3% 54.0%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.80e-01 100.0% 91.3%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.97e-01 100.0% 88.7%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 4.01e-01 100.0% 98.5%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 41.0 2.74e-01 82.9% 85.7%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 45.0 2.95e-01 95.7% 41.1%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.15e-01 98.6% 44.9%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.80e-01 98.6% 19.0%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 43.0 3.56e-01 88.6% 81.9%
2eeiA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 43.0 3.84e-01 92.9% 73.6%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 38.0 3.00e-01 77.1% 93.7%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.32e-01 98.6% 46.9%
4jhnD00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.53 46.0 2.95e-01 100.0% 75.3%
1ki1B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.68e-01 100.0% 80.3%
6eziA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 40.0 3.80e-01 84.3% 83.7%
1qwyA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.53 40.0 3.08e-01 84.3% 45.9%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.92e-01 100.0% 61.0%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 42.0 3.64e-01 98.6% 95.9%
1f1sA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 42.0 2.90e-01 95.7% 98.5%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.45e-01 95.7% 82.5%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 42.0 2.89e-01 100.0% 50.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3416385 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.64 45.0 3.26e-01 94.3% 26.2%
3849839 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.62 53.0 4.81e-01 98.6% 94.0%
1318713 3894.1.1.2 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD 0.61 42.0 3.48e-01 80.0% 39.7%
4024399 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.59 49.0 3.38e-01 94.3% 84.6%
6667 4221.1.1.1 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.59 43.0 4.26e-01 92.9% 73.1%
3996209 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 51.0 4.01e-01 100.0% 89.3%
3935486 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.21e-01 100.0% 78.4%
2157212 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 51.0 4.10e-01 100.0% 95.7%
3596980 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.58 47.0 3.44e-01 91.4% 63.9%
5002093 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 51.0 4.00e-01 100.0% 64.7%
3629564 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 51.0 4.06e-01 100.0% 84.1%
5002677 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 51.0 4.02e-01 100.0% 64.8%
3939969 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.57 51.0 3.34e-01 100.0% 34.3%
999017 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.57 50.0 4.04e-01 100.0% 76.8%
3509392 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 50.0 3.85e-01 98.6% 62.5%
1077 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.56 50.0 3.92e-01 100.0% 88.7%
3219131 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.56 49.0 4.01e-01 100.0% 97.0%
3260943 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.42e-01 100.0% 85.7%
3519451 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 49.0 3.85e-01 100.0% 92.4%
3584575 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 40.0 3.08e-01 80.0% 42.9%
3621272 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.54 45.0 3.77e-01 98.6% 76.3%
3198610 206.1.1.73 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, APH 0.54 46.0 3.19e-01 98.6% 83.9%
3585860 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 48.0 3.78e-01 100.0% 84.0%
4041350 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.53 39.0 3.08e-01 84.3% 37.9%
3972267 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 44.0 2.95e-01 100.0% 59.4%
3604394 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.53 37.0 3.32e-01 74.3% 79.0%
3212583 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 36.0 3.32e-01 91.4% 52.0%
3231482 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 45.0 3.44e-01 100.0% 87.2%
3618645 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 46.0 3.63e-01 100.0% 88.0%
3842898 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.52 43.0 3.88e-01 98.6% 79.0%
3759576 2484.1.1.288 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PML_C 0.51 42.0 2.88e-01 91.4% 51.8%
3569539 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 3.13e-01 91.4% 73.9%