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IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036394
Arc-VirIMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036394
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-176
Domain cluster:
rep: pre1_saliva_scaffold_4_prodigal-single.1__X__X__00177__D61-102_106-112_123-254
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23849.3 best | Phage_TTP_2 | 31.2 | 3.20e-07 | 98.8% | 81.4% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.77 | 61.0 | 6.17e-01 | 100.0% | 82.1% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.76 | 58.0 | 5.94e-01 | 100.0% | 81.4% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.75 | 59.0 | 5.99e-01 | 100.0% | 83.1% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.72 | 58.0 | 6.02e-01 | 100.0% | 89.9% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.70 | 55.0 | 5.74e-01 | 100.0% | 89.1% |
| 5iqaA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.69 | 32.0 | 4.13e-01 | 95.7% | 76.7% |
| 6fucA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.67 | 30.0 | 3.95e-01 | 95.7% | 75.6% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.66 | 37.0 | 4.64e-01 | 96.9% | 88.9% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.66 | 24.0 | 3.01e-01 | 100.0% | 52.0% |
| 3my2A00 | 2.60.450.10 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain | 0.65 | 28.0 | 3.12e-01 | 99.4% | 49.2% |
| 3ne5C02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.63 | 35.0 | 4.30e-01 | 91.9% | 84.3% |
| 4lfhD02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 28.0 | 3.66e-01 | 85.7% | 74.1% |
| 3ba3B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 4.77e-01 | 100.0% | 83.2% |
| 1lvbA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 31.0 | 3.70e-01 | 96.3% | 70.4% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 24.0 | 2.91e-01 | 96.9% | 56.9% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.56 | 45.0 | 4.57e-01 | 96.9% | 85.9% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 29.0 | 3.47e-01 | 85.1% | 75.0% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.53 | 40.0 | 4.32e-01 | 98.8% | 93.4% |
| 1wzaA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 26.0 | 3.53e-01 | 96.9% | 94.9% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 28.0 | 3.22e-01 | 90.1% | 69.8% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 26.0 | 3.25e-01 | 85.1% | 76.2% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.88 | 76.0 | 7.62e-01 | 98.8% | 87.7% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.86 | 68.0 | 7.17e-01 | 100.0% | 89.7% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.86 | 67.0 | 6.98e-01 | 100.0% | 86.6% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.85 | 75.0 | 7.83e-01 | 100.0% | 98.7% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.85 | 71.0 | 7.30e-01 | 100.0% | 89.7% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.85 | 67.0 | 7.18e-01 | 100.0% | 92.3% |
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.85 | 66.0 | 7.34e-01 | 100.0% | 99.2% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.84 | 69.0 | 7.18e-01 | 100.0% | 91.3% |
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.82 | 54.0 | 6.37e-01 | 100.0% | 93.0% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.82 | 58.0 | 4.81e-01 | 99.4% | 43.3% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.81 | 61.0 | 6.57e-01 | 100.0% | 89.3% |
| 3096576 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.81 | 67.0 | 6.80e-01 | 100.0% | 86.8% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.81 | 57.0 | 6.32e-01 | 100.0% | 90.6% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.80 | 68.0 | 6.98e-01 | 100.0% | 92.8% |
| 3942090 | 1.1.5.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube | 0.78 | 61.0 | 6.05e-01 | 100.0% | 78.8% |
| 136185 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.77 | 61.0 | 6.17e-01 | 100.0% | 82.1% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.76 | 60.0 | 5.94e-01 | 100.0% | 78.8% |
| 5082881 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.76 | 57.0 | 6.42e-01 | 99.4% | 100.0% |
| 4929752 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.75 | 59.0 | 6.02e-01 | 100.0% | 83.9% |
| 1563850 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.75 | 59.0 | 5.99e-01 | 100.0% | 83.1% |
| 80 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 58.0 | 5.91e-01 | 100.0% | 81.9% |
| 3942828 | 1.1.13.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 | 0.74 | 60.0 | 6.31e-01 | 100.0% | 95.2% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 57.0 | 4.76e-01 | 100.0% | 49.3% |
| 3942477 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.72 | 60.0 | 6.04e-01 | 100.0% | 87.1% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.71 | 57.0 | 5.88e-01 | 100.0% | 87.1% |
| 3164479 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.71 | 28.0 | 3.65e-01 | 100.0% | 61.1% |
| 3966547 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.71 | 28.0 | 3.47e-01 | 100.0% | 56.0% |
| 3943316 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 60.0 | 6.02e-01 | 100.0% | 93.1% |
| 5004308 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 58.0 | 5.90e-01 | 100.0% | 92.9% |
| 3590380 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 58.0 | 5.64e-01 | 100.0% | 83.9% |
| 2464332 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.66 | 26.0 | 3.23e-01 | 100.0% | 55.2% |
| 3964955 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 59.0 | 6.01e-01 | 100.0% | 98.8% |
| 4422834 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.62 | 26.0 | 3.60e-01 | 83.9% | 78.7% |
| 3478734 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 36.0 | 4.09e-01 | 85.7% | 82.5% |
| 3580020 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 52.0 | 4.88e-01 | 98.1% | 82.6% |
| None | — | 0.57 | 34.0 | 2.86e-01 | 100.0% | 33.6% | |
| 184718 | 1.1.13.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_12 | 0.56 | 45.0 | 4.57e-01 | 96.9% | 85.9% |
| 4957584 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.56 | 39.0 | 4.46e-01 | 95.7% | 98.3% |
| 5012991 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.56 | 35.0 | 3.93e-01 | 98.1% | 81.7% |
| 3494040 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 35.0 | 3.67e-01 | 86.3% | 70.3% |
| 5006840 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.54 | 34.0 | 3.76e-01 | 98.1% | 77.5% |
| 3596185 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 30.0 | 2.60e-01 | 100.0% | 32.2% |
| 3966645 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.53 | 38.0 | 4.21e-01 | 96.3% | 95.2% |
| 3553625 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.51 | 18.0 | 3.00e-01 | 91.9% | 89.1% |
| 3291118 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.51 | 31.0 | 3.22e-01 | 98.1% | 64.0% |