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IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036417
Arc-VirIMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036417
Identity
- Kingdom:
- archaea
Quality
90.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-194
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.77 | 41.0 | 5.54e-01 | 70.7% | 98.6% |
| 1tzpB00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.77 | 62.0 | 5.01e-01 | 84.2% | 70.3% |
| 1vhhA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.69 | 65.0 | 6.14e-01 | 100.0% | 94.3% |
| 4lrjA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.68 | 35.0 | 4.65e-01 | 75.2% | 91.8% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.68 | 46.0 | 5.27e-01 | 70.7% | 92.9% |
| 1lbuA02 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.66 | 51.0 | 5.23e-01 | 82.7% | 90.7% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.65 | 39.0 | 4.38e-01 | 100.0% | 76.7% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.64 | 39.0 | 4.44e-01 | 97.0% | 83.2% |
| 3vaxA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 43.0 | 5.05e-01 | 71.4% | 97.9% |
| 3zxoA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.61 | 50.0 | 5.14e-01 | 86.5% | 96.8% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.60 | 46.0 | 4.13e-01 | 100.0% | 58.0% |
| 3zx4A02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.59 | 38.0 | 4.60e-01 | 70.7% | 100.0% |
| 2bwnB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 33.0 | 3.13e-01 | 72.2% | 44.7% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.58 | 22.0 | 3.12e-01 | 75.2% | 70.1% |
| 4mjgA00 | 3.30.2030.30 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.57 | 39.0 | 3.61e-01 | 72.2% | 52.5% |
| 1jvaB02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 35.0 | 3.81e-01 | 91.0% | 75.5% |
| 6blkC00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 48.0 | 4.52e-01 | 96.2% | 96.2% |
| 3iylW02 | 3.55.60.10 | Alpha Beta › 3-Layer(bab) Sandwich › Reovirus components fold › Reovirus components | 0.51 | 36.0 | 3.52e-01 | 100.0% | 64.9% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 33.0 | 3.90e-01 | 94.7% | 97.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5054060 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.74 | 46.0 | 5.59e-01 | 84.2% | 96.5% |
| 5006395 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.74 | 45.0 | 5.54e-01 | 100.0% | 96.4% |
| 3365319 | 3012.1.1.11 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27677 | 0.69 | 41.0 | 5.09e-01 | 71.4% | 97.5% |
| 3278887 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.67 | 48.0 | 3.80e-01 | 73.7% | 82.7% |
| 4086765 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.64 | 39.0 | 4.22e-01 | 100.0% | 72.7% |
| 4633760 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.63 | 38.0 | 4.12e-01 | 100.0% | 69.9% |
| 5062980 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.63 | 46.0 | 4.43e-01 | 100.0% | 67.3% |
| 4160031 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.62 | 38.0 | 4.08e-01 | 100.0% | 69.6% |
| 4221596 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.62 | 39.0 | 4.16e-01 | 100.0% | 72.2% |
| 3602910 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.62 | 36.0 | 4.26e-01 | 96.2% | 84.4% |
| 3781365 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.62 | 35.0 | 4.44e-01 | 94.7% | 97.3% |
| 4135983 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.61 | 40.0 | 4.55e-01 | 70.7% | 89.0% |
| 3289074 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.61 | 53.0 | 5.39e-01 | 95.5% | 97.7% |
| 4373762 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.61 | 39.0 | 4.08e-01 | 100.0% | 70.8% |
| 2627446 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.60 | 47.0 | 4.17e-01 | 100.0% | 57.4% |
| 3602727 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.60 | 35.0 | 4.17e-01 | 97.0% | 84.4% |
| 4681936 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.60 | 38.0 | 4.04e-01 | 100.0% | 73.0% |
| 3831436 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.60 | 32.0 | 3.96e-01 | 100.0% | 85.0% |
| 7178 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.59 | 46.0 | 4.09e-01 | 100.0% | 58.0% |
| 3683636 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.58 | 31.0 | 3.90e-01 | 100.0% | 87.0% |
| 3476029 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.58 | 46.0 | 4.11e-01 | 100.0% | 60.0% |
| 3444368 | 304.156.1.4 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF2854 | 0.58 | 44.0 | 4.49e-01 | 80.5% | 98.5% |
| 5071069 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.58 | 48.0 | 4.02e-01 | 100.0% | 52.7% |
| 4418704 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.58 | 37.0 | 3.57e-01 | 100.0% | 55.5% |
| 3718665 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 34.0 | 3.99e-01 | 99.2% | 88.2% |
| 4367047 | 304.156.1.1 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › FtsK_alpha | 0.57 | 45.0 | 4.86e-01 | 84.2% | 100.0% |
| 5065111 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.55 | 46.0 | 3.95e-01 | 100.0% | 57.1% |
| 5071258 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.55 | 46.0 | 3.96e-01 | 100.0% | 56.7% |
| 3473363 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.54 | 28.0 | 3.74e-01 | 97.0% | 98.5% |
| 5074064 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.53 | 46.0 | 3.92e-01 | 99.2% | 58.1% |
| 4952898 | 3352.1.1.7 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DUF2142 | 0.52 | 46.0 | 3.22e-01 | 98.5% | 93.3% |
| 4336441 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.52 | 33.0 | 3.89e-01 | 72.2% | 90.5% |
| 5040976 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.52 | 41.0 | 3.62e-01 | 85.0% | 92.5% |
| 3187043 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 33.0 | 3.83e-01 | 97.7% | 95.6% |
| 3036035 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.51 | 37.0 | 4.06e-01 | 75.2% | 96.2% |
| 3500307 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.50 | 34.0 | 3.62e-01 | 98.5% | 77.4% |
| 3679905 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.50 | 32.0 | 3.41e-01 | 98.5% | 73.0% |
D2
medium
residues 1-61
Domain cluster:
representative