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IMGVR_UViG_3300033571_022517-3300033571-Ga0364548_120153288

Arc-Vir

IMGVR_UViG_3300033571_022517-3300033571-Ga0364548_120153288

Quality

92.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-74
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ii7A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.77 68.0 4.59e-01 100.0% 27.3%
4ycsA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.73 47.0 3.86e-01 75.8% 35.8%
1gcaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.70 45.0 3.45e-01 75.8% 29.1%
1t4yA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 44.0 3.97e-01 75.8% 49.4%
3lftA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 45.0 3.48e-01 75.8% 30.9%
3er6A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.66 54.0 3.91e-01 93.9% 31.2%
4jmjA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 53.0 3.90e-01 90.9% 63.0%
1wp9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 49.0 3.58e-01 100.0% 28.6%
3g23A02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.63 50.0 4.39e-01 100.0% 56.2%
3u7iA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.63 43.0 3.06e-01 75.8% 22.0%
2h8lA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 43.0 3.63e-01 71.2% 42.9%
2k18A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 40.0 3.34e-01 77.3% 35.8%
2dj0A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 40.0 3.29e-01 72.7% 34.1%
1l1sA00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.62 50.0 4.32e-01 100.0% 55.9%
2z0mA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 54.0 3.88e-01 98.5% 66.5%
3guvA00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.61 43.0 3.40e-01 78.8% 33.6%
4yleA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 42.0 3.38e-01 77.3% 35.8%
2b5eA04 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 40.0 3.25e-01 77.3% 33.6%
4evsA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 42.0 3.06e-01 75.8% 28.4%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.59 39.0 3.49e-01 77.3% 46.9%
7ncyB01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 47.0 3.90e-01 90.9% 81.8%
3lqkA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.57 44.0 3.28e-01 100.0% 29.9%
4ly4A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.57 50.0 3.28e-01 100.0% 23.4%
1pi3A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.57 48.0 3.59e-01 100.0% 36.5%
2v3jA01 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.56 48.0 3.48e-01 98.5% 54.5%
2ykgA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 3.34e-01 100.0% 33.8%
4hi0E00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.40e-01 100.0% 43.4%
1mwwB00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.54 38.0 3.23e-01 75.8% 80.5%
3eeiA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 45.0 3.21e-01 100.0% 80.1%
4m1aA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 39.0 3.34e-01 75.8% 84.1%
3ej3C00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 36.0 3.73e-01 72.7% 71.9%
3abfA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 37.0 3.79e-01 72.7% 71.9%
2xczA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 41.0 3.45e-01 86.4% 78.1%
6ogmD00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 35.0 3.67e-01 72.7% 75.4%
3e6qA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 37.0 3.07e-01 77.3% 77.8%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 45.0 4.04e-01 100.0% 95.8%
2zskA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.71e-01 100.0% 78.4%
2fm7A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 35.0 3.68e-01 72.7% 74.2%
3ej7H00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 35.0 3.77e-01 72.7% 83.3%
6lkvA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 39.0 3.11e-01 81.8% 76.7%
5z6bA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 37.0 2.75e-01 77.3% 84.7%
3wgxB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 34.0 3.00e-01 75.8% 42.0%
3m20A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.50 35.0 3.69e-01 71.2% 74.6%
4x04A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.50 38.0 2.52e-01 83.3% 64.3%
1ghhA00 3.30.910.10 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like 0.50 35.0 3.29e-01 72.7% 56.8%
2wkbA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.50 35.0 3.05e-01 72.7% 47.4%
4fdxB00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.50 36.0 3.74e-01 72.7% 71.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080233 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.73 64.0 4.15e-01 100.0% 21.3%
1513137 2007.1.2.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp 0.73 47.0 3.86e-01 75.8% 35.8%
4928618 2004.1.1.260 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS 0.69 60.0 4.53e-01 100.0% 62.4%
3836729 7589.1.1.2 a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C 0.66 57.0 4.15e-01 100.0% 48.2%
3720513 2002.3.1.2 a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 0.65 56.0 3.68e-01 100.0% 36.7%
3788105 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.65 54.0 3.70e-01 95.5% 58.0%
4498648 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.64 56.0 3.80e-01 100.0% 31.9%
5001425 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.63 43.0 3.25e-01 72.7% 27.9%
None 0.63 55.0 3.97e-01 100.0% 35.1%
5057089 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.63 54.0 3.61e-01 100.0% 44.3%
4480662 2007.1.2.13 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.63 45.0 3.04e-01 75.8% 22.0%
4605242 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.62 53.0 3.65e-01 100.0% 31.9%
3263816 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.62 50.0 3.40e-01 100.0% 23.0%
4969639 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.62 43.0 3.77e-01 87.9% 46.7%
1190498 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.62 53.0 4.04e-01 100.0% 49.1%
3629580 2485.1.1.101 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF31104 0.62 43.0 3.53e-01 72.7% 45.6%
3408886 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.61 49.0 3.04e-01 100.0% 13.3%
5045616 2007.2.1.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red 0.60 50.0 3.66e-01 100.0% 31.1%
5026171 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 51.0 3.29e-01 100.0% 20.3%
3928809 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.59 48.0 3.36e-01 100.0% 25.8%
None 0.59 40.0 2.62e-01 72.7% 14.9%
1524150 7523.1.1.16 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP 0.59 39.0 3.23e-01 74.2% 35.8%
3281225 2002.3.1.2 a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 0.59 51.0 3.39e-01 100.0% 85.6%
3247200 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 39.0 3.37e-01 74.2% 40.9%
3785704 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 38.0 2.90e-01 74.2% 26.7%
3196271 2002.3.1.2 a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 0.57 50.0 3.31e-01 100.0% 23.9%
None 0.57 50.0 3.28e-01 100.0% 23.0%
3374492 7512.1.1.27 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › O-FucT 0.57 47.0 3.46e-01 100.0% 33.5%
3509382 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.57 47.0 3.77e-01 100.0% 86.0%
3851420 327.11.1.4 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › MRP-S24 0.56 40.0 3.24e-01 77.3% 57.7%
4972318 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 39.0 3.49e-01 75.8% 51.6%
2413755 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.55 45.0 3.30e-01 98.5% 87.9%
4059350 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.55 37.0 3.59e-01 74.2% 60.0%
3678799 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.55 44.0 3.01e-01 89.4% 59.2%
3945722 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.54 36.0 3.51e-01 72.7% 58.7%
2116981 2008.1.1.66 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ArenaCapSnatch 0.54 38.0 2.87e-01 75.8% 25.8%
3716885 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.54 41.0 2.71e-01 83.3% 81.9%
2617481 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.53 36.0 3.72e-01 72.7% 74.2%
2814166 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.53 36.0 3.56e-01 72.7% 66.7%
3182714 2003.1.11.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.53 37.0 2.95e-01 74.2% 35.2%
5043849 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.53 37.0 3.32e-01 77.3% 50.0%
3785907 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.53 37.0 3.17e-01 75.8% 46.1%
4177287 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.53 37.0 3.85e-01 74.2% 78.3%
143142 2007.1.5.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race 0.52 45.0 3.88e-01 100.0% 78.2%
4122147 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.52 35.0 3.42e-01 72.7% 61.3%
4963866 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.52 41.0 3.34e-01 84.8% 76.7%
407735 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.51 37.0 3.85e-01 75.8% 76.2%
4879584 315.1.1.1 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF 0.51 35.0 3.15e-01 74.2% 49.0%
5080188 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.51 35.0 3.66e-01 71.2% 75.0%
2137603 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.51 35.0 3.68e-01 72.7% 76.7%
4872472 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.50 34.0 3.77e-01 75.8% 94.1%
4937 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.50 35.0 3.29e-01 72.7% 56.8%
1030446 315.1.1.2 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.50 36.0 3.74e-01 72.7% 71.9%