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IMGVR_UViG_3300033781_000023-3300033781-Ga0326759_00045_49749_50003

Arc-Vir

IMGVR_UViG_3300033781_000023-3300033781-Ga0326759_00045_49749_50003

Identity

Kingdom:
archaea

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-85
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.11e-01 98.1% 60.0%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.34e-01 100.0% 67.1%
3rh2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 59.0 3.94e-01 98.1% 49.8%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.90e-01 98.1% 61.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.27e-01 96.2% 55.2%
1hr7C02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.61 43.0 2.84e-01 75.0% 68.9%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.46e-01 96.2% 65.9%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.64e-01 90.4% 84.5%
1psrA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 40.0 3.35e-01 75.0% 76.0%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 48.0 4.07e-01 100.0% 97.9%
3rwlA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 42.0 2.66e-01 96.2% 31.4%
3k9dA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.51 43.0 3.02e-01 100.0% 50.8%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010731 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.96 90.0 6.08e-01 100.0% 31.9%
4927051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 73.0 6.57e-01 96.2% 81.4%
3288971 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.73 59.0 4.28e-01 90.4% 33.3%
3956363 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.72 62.0 5.55e-01 100.0% 69.3%
1034912 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.72 61.0 5.54e-01 98.1% 70.8%
3184003 101.1.1.216 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_8 0.71 59.0 5.79e-01 94.2% 87.3%
3640032 101.1.3.9 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 0.70 58.0 5.74e-01 92.3% 90.9%
5027877 101.1.2.82 ↗ alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.70 58.0 5.12e-01 98.1% 62.5%
2578 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.69 58.0 5.23e-01 100.0% 68.0%
5048389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.60e-01 100.0% 84.7%
3589863 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.68 57.0 4.85e-01 98.1% 58.9%
4551803 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.67 56.0 4.85e-01 98.1% 67.1%
5025623 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.65 54.0 4.82e-01 98.1% 70.0%
5007105 101.1.2.674 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29648 0.65 51.0 5.07e-01 98.1% 85.5%
4954539 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 5.30e-01 100.0% 98.0%
5035857 101.1.7.1 ↗ alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 0.64 48.0 4.85e-01 94.2% 90.0%
4013286 101.1.3.9 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 0.63 51.0 5.05e-01 94.2% 90.9%
5047003 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 51.0 4.75e-01 98.1% 87.1%
3905883 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 45.0 3.23e-01 82.7% 31.7%
3214519 706.1.1.0 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE 0.59 39.0 3.66e-01 78.8% 52.9%
4982611 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.60e-01 100.0% 40.3%
3722415 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.57 47.0 2.91e-01 100.0% 72.4%
132378 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.54 39.0 3.40e-01 86.5% 54.2%
3183850 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.52 40.0 2.63e-01 94.2% 46.3%