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IMGVR_UViG_3300033781_000034-3300033781-Ga0326759_00004_132955_134040

Arc-Vir

IMGVR_UViG_3300033781_000034-3300033781-Ga0326759_00004_132955_134040

Quality

95.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 139-332
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00162.25 best PGK 134.6 6.30e-39 100.0% 51.2%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cunA02 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.92 88.0 8.73e-01 97.9% 97.0%
5bt8A02 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.87 84.0 8.04e-01 100.0% 90.4%
16pkA02 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.87 84.0 8.17e-01 100.0% 95.7%
1ep3B02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.71 44.0 5.41e-01 88.1% 100.0%
4g1vA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.69 48.0 5.58e-01 93.3% 100.0%
1krhA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.69 46.0 5.43e-01 88.7% 97.0%
4wqmA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.68 46.0 5.42e-01 88.7% 100.0%
4q9dA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.67 43.0 4.64e-01 100.0% 75.5%
4c6sA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.67 41.0 4.73e-01 96.9% 83.1%
3fi9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 47.0 5.38e-01 98.5% 98.6%
1e5dA01 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.64 39.0 4.53e-01 95.9% 83.2%
1f0kA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 47.0 4.97e-01 96.4% 88.0%
4c6rA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.61 44.0 4.76e-01 96.4% 86.4%
6dqoA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.61 43.0 4.52e-01 96.4% 79.2%
1fdrA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.61 45.0 5.02e-01 89.7% 98.0%
6dftJ00 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.60 55.0 4.66e-01 100.0% 82.9%
2bgiA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 45.0 5.02e-01 88.7% 100.0%
4p63D00 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.59 54.0 4.64e-01 100.0% 83.7%
1vc1A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.58 31.0 3.98e-01 99.5% 89.1%
3nraA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 42.0 3.99e-01 100.0% 63.2%
1h4xA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.58 32.0 3.97e-01 92.8% 90.1%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 52.0 4.42e-01 97.4% 83.2%
2vzfA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.57 41.0 4.18e-01 97.4% 74.2%
3umoA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 52.0 4.40e-01 97.4% 82.5%
2hwwB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.57 42.0 4.65e-01 95.4% 95.5%
2r3bA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 52.0 4.60e-01 99.0% 73.8%
3ix7A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.56 37.0 4.26e-01 96.9% 96.9%
3cb2B01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.56 50.0 4.52e-01 96.9% 76.2%
4mp8A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 4.85e-01 100.0% 100.0%
7l9rB01 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.54 50.0 4.49e-01 100.0% 85.1%
3tkaA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 4.28e-01 91.8% 84.8%
1jakA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 48.0 4.06e-01 97.4% 95.3%
2p4hX00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 49.0 4.13e-01 97.9% 76.5%
3dhnA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 48.0 4.67e-01 97.4% 96.8%
1mkyA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 35.0 3.89e-01 95.9% 83.3%
3lhxA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 48.0 4.14e-01 99.5% 86.3%
3r7wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 4.21e-01 97.4% 87.9%
7w6bA01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.52 46.0 4.07e-01 95.4% 98.2%
3zs7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 44.0 3.93e-01 97.9% 63.5%
4ogzA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 4.00e-01 96.4% 90.3%
2jh3A02 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 31.0 3.73e-01 79.4% 92.7%
5mifA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 3.57e-01 85.1% 58.9%
3ke3A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 39.0 3.55e-01 91.8% 59.1%
7zs9401 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.51 45.0 4.35e-01 96.4% 94.2%
3oqvA00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.51 46.0 4.49e-01 97.9% 96.2%
5bq5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 3.78e-01 100.0% 77.5%
3otgA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 46.0 4.37e-01 98.5% 90.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076009 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.94 92.0 8.91e-01 100.0% 92.9%
4981132 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.94 92.0 8.62e-01 100.0% 87.6%
5054979 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.94 89.0 8.58e-01 100.0% 87.9%
4044623 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.94 92.0 8.44e-01 100.0% 84.3%
5039034 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.93 91.0 8.55e-01 100.0% 86.7%
4948183 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.93 91.0 8.60e-01 100.0% 87.7%
4931799 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.93 91.0 8.54e-01 100.0% 86.2%
5079407 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.92 90.0 8.47e-01 100.0% 87.6%
4052858 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.92 90.0 8.46e-01 100.0% 87.1%
5047574 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.92 88.0 8.75e-01 100.0% 95.5%
4956690 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.92 88.0 8.61e-01 100.0% 92.7%
5069380 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.92 89.0 8.37e-01 100.0% 85.8%
5006993 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.91 89.0 8.41e-01 100.0% 87.7%
5029891 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.91 89.0 8.54e-01 100.0% 90.2%
4296393 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.90 86.0 8.15e-01 100.0% 86.4%
5052654 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.90 87.0 8.21e-01 100.0% 88.4%
4941090 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.90 87.0 8.45e-01 100.0% 92.4%
4937029 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.90 83.0 8.04e-01 100.0% 87.3%
4366231 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 84.0 8.07e-01 100.0% 87.4%
4984254 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 84.0 8.16e-01 100.0% 90.0%
4585982 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 86.0 8.30e-01 100.0% 91.4%
4946765 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 86.0 8.17e-01 100.0% 87.7%
5001203 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 86.0 8.07e-01 100.0% 87.1%
4221282 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 86.0 8.01e-01 100.0% 85.7%
4643332 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 86.0 7.99e-01 100.0% 83.9%
4613768 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 86.0 8.07e-01 100.0% 86.8%
4376474 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.88 86.0 8.36e-01 100.0% 92.9%
4082183 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.88 85.0 8.07e-01 100.0% 87.7%
3999462 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.88 85.0 7.94e-01 100.0% 86.1%
4883593 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.87 82.0 8.20e-01 99.5% 95.9%
3705512 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.87 84.0 7.71e-01 100.0% 89.2%
3596664 7533.1.1.0 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 0.87 84.0 7.91e-01 100.0% 88.9%
4246031 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.87 84.0 7.92e-01 100.0% 88.0%
3330053 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.86 82.0 7.77e-01 100.0% 87.1%
3469547 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.85 81.0 7.75e-01 100.0% 90.5%
3962813 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.83 81.0 7.68e-01 100.0% 89.5%
3193301 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.72 45.0 5.52e-01 90.2% 99.2%
4966509 2007.9.1.4 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.71 42.0 4.93e-01 97.9% 82.2%
4147126 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.69 45.0 5.40e-01 97.4% 99.2%
3263799 2007.9.1.4 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.69 40.0 4.76e-01 95.9% 82.2%
4931558 2007.15.1.0 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase 0.68 48.0 5.58e-01 97.9% 100.0%
5075888 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.65 33.0 4.00e-01 100.0% 71.5%
None 0.62 45.0 5.09e-01 96.9% 96.0%
4677493 2003.1.5.293 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NAD-bd_HRPKS_sdrA 0.62 46.0 3.74e-01 100.0% 40.3%
4981291 7584.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.62 39.0 3.46e-01 100.0% 43.6%
11463 2496.1.1.2 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.61 32.0 4.08e-01 97.9% 84.3%
5075895 7514.1.1.8 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › DHODB_Fe-S_bind 0.61 46.0 4.85e-01 97.9% 87.4%
5045601 2003.1.4.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › DS 0.60 55.0 4.75e-01 100.0% 83.3%
4519492 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.60 42.0 3.65e-01 100.0% 47.6%
3981692 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.58 53.0 4.54e-01 97.4% 86.2%
4144970 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.58 36.0 4.25e-01 96.4% 89.6%
3302396 2007.9.1.1 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.57 42.0 4.49e-01 96.9% 86.5%
3178279 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.57 53.0 4.39e-01 100.0% 86.4%
4479403 2004.1.1.68 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IstB_IS21 0.56 40.0 3.79e-01 100.0% 59.6%
4990906 7522.1.1.4 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.55 35.0 4.13e-01 96.4% 90.0%
3959968 2496.1.1.2 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.54 29.0 3.68e-01 94.8% 94.0%
5019423 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.54 36.0 3.12e-01 100.0% 41.9%
4977924 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.53 37.0 3.94e-01 97.9% 78.7%
3921511 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 36.0 3.99e-01 96.4% 86.7%
3178659 2007.1.1.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI 0.52 46.0 4.36e-01 96.9% 92.9%
3579922 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 38.0 3.83e-01 98.5% 75.4%
3870334 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 37.0 3.25e-01 98.5% 49.8%
D2 medium residues 2-129_343-359
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00162.25 best PGK 136.7 1.50e-39 98.6% 32.7%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cunA01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.98 96.0 8.25e-01 99.3% 77.9%
3q3vA01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.90 76.0 7.09e-01 88.3% 72.7%
4ng4B01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.88 76.0 7.03e-01 97.2% 73.7%
1hdiA01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.87 74.0 6.72e-01 88.3% 75.1%
1fw8A01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.83 70.0 5.84e-01 86.2% 73.3%
2nyvA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 42.0 4.20e-01 94.5% 65.8%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 39.0 4.17e-01 88.3% 76.0%
1z5zB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 45.0 4.40e-01 94.5% 73.5%
2pjuA02 3.40.50.10660 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PrpR receptor domain-like 0.59 34.0 4.09e-01 88.3% 89.8%
1l6rA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.59 43.0 4.18e-01 95.2% 68.8%
3zxsA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 40.0 3.95e-01 88.3% 64.4%
5ze7A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 43.0 4.19e-01 98.6% 74.2%
2px0A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 48.0 4.50e-01 97.2% 90.3%
2zskA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 38.0 4.18e-01 86.9% 91.8%
5tshA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.75e-01 94.5% 81.9%
2hi0A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 42.0 4.16e-01 99.3% 80.1%
2ewvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.86e-01 94.5% 78.0%
3hr7B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 4.16e-01 86.2% 89.0%
4ljyA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.77e-01 96.6% 56.9%
7ekoK01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 39.0 3.47e-01 80.7% 84.0%
4c5yA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 45.0 3.57e-01 100.0% 66.7%
1j79A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 41.0 3.23e-01 91.0% 66.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4517019 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.99 86.0 7.74e-01 88.3% 69.2%
4617215 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.99 94.0 8.21e-01 97.2% 74.5%
4293082 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.97 90.0 8.08e-01 100.0% 74.1%
4948182 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.97 84.0 7.68e-01 91.0% 71.7%
5029890 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.93 80.0 7.43e-01 91.7% 73.1%
3309512 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.89 77.0 6.98e-01 97.2% 69.7%
4886634 7533.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.89 76.0 7.03e-01 88.3% 72.6%
4946764 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.89 74.0 6.97e-01 88.3% 73.5%
4984253 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.87 81.0 7.26e-01 100.0% 74.2%
4041601 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.86 77.0 7.01e-01 96.6% 73.9%
4051067 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.86 81.0 7.01e-01 97.2% 75.1%
4057208 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.86 77.0 6.77e-01 91.7% 76.9%
4269440 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.85 76.0 6.82e-01 91.7% 76.8%
4599939 7532.1.1.0 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 0.85 76.0 6.87e-01 91.7% 74.6%
3715551 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.85 76.0 6.63e-01 91.7% 76.0%
4446766 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.84 75.0 6.71e-01 91.7% 74.2%
1944481 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.83 63.0 7.10e-01 77.9% 99.1%
3479946 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.83 69.0 7.29e-01 85.5% 100.0%
3469546 7532.1.1.1 a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.82 69.0 6.43e-01 91.7% 72.0%
4153562 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.62 54.0 4.48e-01 97.9% 54.0%
3839112 2004.1.1.364 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.59 50.0 3.52e-01 97.9% 27.8%
4944398 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.59 51.0 4.46e-01 93.1% 68.4%
144575 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 40.0 4.25e-01 88.3% 78.5%
4984261 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.58 50.0 4.22e-01 94.5% 58.0%
4927940 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.58 51.0 3.94e-01 95.9% 54.8%
5079726 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 49.0 4.19e-01 92.4% 62.5%
4970631 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 4.12e-01 94.5% 54.3%
4033116 2004.1.1.194 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 0.58 51.0 4.48e-01 96.6% 73.5%
4948689 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.57 51.0 3.98e-01 97.9% 55.7%
4995767 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.57 51.0 4.15e-01 97.2% 54.4%
3832845 2004.1.1.178 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HDA2-3 0.57 50.0 3.51e-01 95.9% 45.7%
4993669 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.57 49.0 4.28e-01 93.8% 65.9%
4940101 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.57 49.0 4.26e-01 93.8% 65.9%
3414771 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 49.0 4.60e-01 96.6% 77.7%
3696926 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.56 47.0 3.97e-01 92.4% 53.0%
4928057 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.56 49.0 4.03e-01 97.9% 65.9%
4985936 7512.1.1.18 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn 0.56 50.0 4.08e-01 100.0% 70.0%
3958641 2004.1.1.260 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS 0.55 49.0 4.66e-01 98.6% 82.9%
5047114 7597.1.1.0 a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.55 32.0 3.89e-01 77.2% 92.2%
3506123 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.55 50.0 4.29e-01 99.3% 86.5%
4535526 2004.1.1.106 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N 0.54 44.0 4.29e-01 86.9% 83.1%
4979530 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 4.17e-01 96.6% 68.8%
3939480 2003.1.7.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.53 47.0 4.04e-01 95.2% 85.2%
4279968 2003.1.7.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.53 48.0 4.06e-01 98.6% 87.5%
3980700 2006.1.1.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 44.0 4.12e-01 95.2% 72.8%
4971078 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 40.0 3.85e-01 82.8% 98.8%
4997998 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 45.0 4.21e-01 97.2% 96.1%
3515603 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 46.0 4.15e-01 100.0% 79.5%