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IMGVR_UViG_3300033889_000591-3300033889-Ga0373411_0000381_604_864

Arc-Vir

IMGVR_UViG_3300033889_000591-3300033889-Ga0373411_0000381_604_864

Identity

Kingdom:
archaea

Quality

68.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zy2A02 1.10.20.110 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.74 42.0 3.03e-01 87.3% 21.1%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.74 51.0 5.71e-01 74.5% 93.0%
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.67 55.0 4.88e-01 90.9% 81.2%
4at7B01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.66 45.0 3.30e-01 70.9% 64.7%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 44.0 4.04e-01 74.5% 57.7%
5feyA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 42.0 3.78e-01 70.9% 55.1%
3vmnA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 52.0 3.13e-01 96.4% 22.4%
2zw9B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 43.0 2.67e-01 78.2% 21.7%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.77e-01 96.4% 51.7%
2mbvA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.57 44.0 3.72e-01 87.3% 68.8%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 39.0 3.56e-01 80.0% 54.3%
2jh3A03 3.30.1360.190 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 42.0 3.34e-01 85.5% 58.9%
2z39A02 3.30.20.10 Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2 0.51 36.0 3.56e-01 76.4% 79.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992222 377.1.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 0.84 61.0 4.81e-01 76.4% 40.0%
5026028 3393.1.1.3 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › DUF3311 0.80 49.0 4.57e-01 83.6% 52.3%
3740778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 38.0 3.42e-01 76.4% 37.3%
4967017 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.70 51.0 3.83e-01 76.4% 35.0%
3785388 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.67 45.0 3.92e-01 90.9% 47.0%
5053378 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 45.0 3.30e-01 83.6% 27.9%
3863643 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 57.0 4.56e-01 100.0% 79.1%
3266881 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 45.0 3.92e-01 74.5% 58.8%
4993740 633.21.1.48 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF4418 0.64 47.0 3.43e-01 76.4% 81.5%
3716962 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.63 48.0 3.46e-01 87.3% 27.4%
3629945 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.62 44.0 3.52e-01 76.4% 38.3%
4452905 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.61 43.0 3.54e-01 74.5% 41.0%
3708262 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.61 53.0 4.38e-01 92.7% 70.0%
3284779 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.59 53.0 4.07e-01 100.0% 44.0%
3924686 3562.1.1.16 ↗ alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Frag1 0.59 52.0 3.33e-01 94.5% 23.7%
3430514 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.59 41.0 3.67e-01 76.4% 51.8%
3700516 376.1.3.14 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CRD 0.58 44.0 3.25e-01 85.5% 87.5%
3473950 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 50.0 3.00e-01 96.4% 38.2%
3595647 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.57 52.0 3.05e-01 100.0% 24.5%
4613383 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.56 44.0 3.75e-01 87.3% 81.1%
3615695 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.53 47.0 2.80e-01 96.4% 19.5%
3781281 377.9.1.4 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-Mss51 0.50 39.0 3.52e-01 83.6% 69.3%
4959344 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.50 38.0 2.68e-01 90.9% 44.5%