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IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_1872_2357

Arc-Vir

IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_1872_2357

Quality

94.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.58 34.0 3.35e-01 94.3% 52.5%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.57 36.0 3.29e-01 94.3% 48.6%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.56 36.0 3.28e-01 94.3% 44.7%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 37.0 3.44e-01 94.3% 55.2%
4jz6A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 45.0 2.99e-01 100.0% 62.5%
3aafA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.08e-01 77.4% 97.2%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.53 43.0 3.56e-01 88.7% 62.8%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.46e-01 90.6% 89.0%
3mcpA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 39.0 2.66e-01 86.8% 33.6%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.53 43.0 3.67e-01 98.1% 70.1%
2z3tA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 38.0 2.38e-01 86.8% 36.4%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.08e-01 88.7% 62.0%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.52 35.0 3.29e-01 100.0% 54.3%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.36e-01 94.3% 85.7%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 36.0 2.17e-01 79.2% 64.6%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.08e-01 90.6% 94.9%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.60e-01 88.7% 73.2%
4rpoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 42.0 3.36e-01 100.0% 93.2%
2d9bA00 3.90.1460.10 Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like 0.50 34.0 2.79e-01 71.7% 54.1%
2vd3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 41.0 3.28e-01 98.1% 92.7%
3mr7A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 37.0 2.75e-01 86.8% 61.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3899209 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.65 49.0 3.39e-01 83.0% 23.6%
3800966 109.20.1.0 alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain 0.61 45.0 2.97e-01 81.1% 29.2%
3721195 109.20.1.1 alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain › COPI_C 0.60 46.0 2.96e-01 83.0% 28.5%
3629836 109.20.1.3 alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain › COPI_C, TPR_COPA_B 0.60 44.0 2.61e-01 81.1% 15.7%
3458015 109.20.1.1 alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain › COPI_C 0.60 45.0 2.94e-01 83.0% 30.4%
5074132 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 47.0 3.69e-01 90.6% 70.0%
5040496 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.59 39.0 3.51e-01 77.4% 46.3%
3256453 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.58 37.0 3.60e-01 94.3% 58.3%
3581677 101.1.2.381 alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.57 43.0 3.58e-01 84.9% 76.0%
3261561 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.57 38.0 3.58e-01 83.0% 55.4%
3594005 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 2.93e-01 77.4% 52.1%
3183587 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.56 41.0 2.79e-01 83.0% 38.2%
3604748 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 2.86e-01 84.9% 40.5%
4266054 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.55 33.0 3.05e-01 96.2% 42.9%
5058434 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 38.0 2.93e-01 73.6% 56.9%
5036369 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.55 37.0 3.29e-01 73.6% 95.3%
3693835 601.1.1.90 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 0.55 40.0 2.95e-01 86.8% 25.9%
5036720 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 44.0 3.81e-01 90.6% 98.8%
4990202 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 33.0 3.37e-01 77.4% 60.0%
3274192 101.1.2.381 alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.54 44.0 2.48e-01 100.0% 11.9%
3233048 101.1.2.381 alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.53 39.0 3.37e-01 83.0% 78.9%
4308955 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.53 39.0 3.12e-01 79.2% 88.2%
5013440 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 2.95e-01 83.0% 67.1%
3262946 101.1.2.381 alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.52 40.0 3.47e-01 90.6% 84.2%
3381258 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.52 41.0 2.94e-01 90.6% 70.6%
4651301 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.52 38.0 3.03e-01 81.1% 80.9%
3954543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.52 40.0 3.07e-01 92.5% 93.7%
4649222 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.52 40.0 3.13e-01 88.7% 64.6%
5040871 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.19e-01 75.5% 52.5%
3632795 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.51 39.0 3.17e-01 84.9% 95.5%
3739375 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.51 41.0 3.23e-01 94.3% 77.6%
3628572 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.51 42.0 3.33e-01 100.0% 93.6%
4963293 101.1.2.921 alpha arrays › HTH › HTH › winged helix domain › DUF7109 0.51 37.0 3.14e-01 79.2% 93.3%
4926796 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 2.76e-01 75.5% 35.0%
D2 medium residues 54-158
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xy4A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.64 41.0 3.93e-01 93.3% 55.3%
6jlzA01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.61 36.0 3.57e-01 80.0% 53.7%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 45.0 3.99e-01 95.2% 53.7%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.61 42.0 3.36e-01 99.0% 34.9%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.61 35.0 3.45e-01 75.2% 52.1%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.95e-01 89.5% 94.6%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.59 32.0 4.02e-01 74.3% 86.4%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 35.0 3.51e-01 76.2% 61.8%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.55 36.0 3.45e-01 77.1% 56.8%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.55 35.0 3.60e-01 80.0% 66.0%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 34.0 4.01e-01 81.9% 88.2%
8ex5A02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 48.0 3.72e-01 98.1% 87.4%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.53 30.0 3.28e-01 94.3% 64.8%
5swcD00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.53 46.0 3.75e-01 98.1% 51.5%
1s9qA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 40.0 3.08e-01 78.1% 82.6%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 40.0 3.76e-01 100.0% 64.2%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.53 44.0 3.28e-01 92.4% 62.1%
3p9dG01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 45.0 3.46e-01 96.2% 70.8%
1oj7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.52 41.0 3.44e-01 88.6% 71.1%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.52 46.0 3.79e-01 95.2% 72.3%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.52 47.0 3.05e-01 99.0% 58.2%
5eroA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 36.0 2.60e-01 73.3% 24.9%
2i53A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 36.0 3.53e-01 85.7% 67.6%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 45.0 3.46e-01 100.0% 69.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286525 4168.1.1.1 alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP 0.68 39.0 4.47e-01 85.7% 75.0%
4932960 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.65 46.0 3.11e-01 73.3% 28.4%
3497021 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.65 40.0 4.10e-01 92.4% 62.9%
3773859 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.64 34.0 3.43e-01 74.3% 51.4%
3858558 4207.1.2.5 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › TEX13 0.64 40.0 4.51e-01 98.1% 86.7%
4022918 1015.1.1.0 alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs 0.63 57.0 4.68e-01 97.1% 89.7%
4048642 101.1.1.304 alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.63 37.0 4.50e-01 89.5% 96.8%
3420386 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.59 41.0 4.45e-01 82.9% 83.3%
3588866 191.1.1.57 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_19 0.58 48.0 4.62e-01 92.4% 77.5%
3925681 633.24.1.2 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.58 43.0 4.59e-01 97.1% 93.3%
3849657 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.57 48.0 4.93e-01 92.4% 96.0%
3482028 109.4.1.1595 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TANGO6_N 0.57 46.0 3.05e-01 92.4% 21.9%
4097040 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.56 33.0 3.39e-01 76.2% 59.0%
3484930 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.55 32.0 3.24e-01 99.0% 57.1%
3932144 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.55 45.0 4.39e-01 88.6% 83.5%
3990268 5067.1.1.3 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.55 49.0 3.89e-01 100.0% 59.5%
3782664 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.54 49.0 3.70e-01 99.0% 99.6%
5065286 129.1.1.0 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.52 44.0 4.32e-01 92.4% 97.4%
3973761 5050.1.1.22 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like 0.52 46.0 3.82e-01 98.1% 86.3%
3202225 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.52 39.0 3.29e-01 81.0% 89.5%
4954779 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.51 44.0 3.34e-01 95.2% 81.2%
5077470 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.51 39.0 3.92e-01 81.0% 83.8%
3346956 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 36.0 3.78e-01 91.4% 82.1%
3936312 309.1.1.4 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.51 41.0 3.19e-01 90.5% 78.2%
3993135 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 37.0 2.97e-01 75.2% 85.6%
5057381 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 35.0 3.84e-01 83.8% 88.2%
4528525 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 2.55e-01 99.0% 37.6%