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IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_5907_6398

Arc-Vir

IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_5907_6398

Quality

92.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-80
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 45.0 4.72e-01 100.0% 75.3%
2q5zB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.65 39.0 3.72e-01 90.0% 51.1%
4gm6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.65 40.0 2.70e-01 70.0% 15.3%
3pwxA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.65 57.0 4.40e-01 100.0% 64.7%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.63 42.0 3.92e-01 100.0% 53.9%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 39.0 3.62e-01 88.7% 50.0%
1zvuA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.61 55.0 4.55e-01 100.0% 60.0%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 50.0 4.52e-01 87.5% 97.2%
6al9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.60 50.0 4.80e-01 90.0% 95.6%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 46.0 3.72e-01 81.2% 96.7%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 48.0 4.33e-01 87.5% 93.5%
3bqkA02 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.58 44.0 3.49e-01 80.0% 84.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.57 47.0 4.46e-01 90.0% 94.7%
3i01A01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 50.0 3.84e-01 100.0% 43.5%
1t3qA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.57 34.0 3.48e-01 76.2% 59.3%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.56 44.0 4.25e-01 83.7% 98.9%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.56 45.0 4.42e-01 86.3% 85.9%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 41.0 3.73e-01 83.7% 94.9%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 43.0 3.96e-01 88.7% 98.1%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 43.0 3.16e-01 90.0% 52.0%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.52 42.0 3.14e-01 86.3% 76.4%
1b8dA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.51 39.0 3.06e-01 85.0% 39.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2540675 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.73 39.0 3.96e-01 80.0% 53.8%
3436384 5050.1.1.2 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.66 45.0 3.15e-01 70.0% 74.7%
3918242 3628.1.1.1 a+b complex topology › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › zf-TFIIIC 0.65 52.0 3.76e-01 85.0% 34.8%
3168396 192.15.1.170 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › SWIRM-assoc_1 0.63 44.0 3.79e-01 100.0% 46.4%
5033071 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.62 46.0 4.30e-01 92.5% 62.0%
3785654 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.62 39.0 2.36e-01 81.2% 9.5%
3683855 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 48.0 3.29e-01 85.0% 36.6%
4167076 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.57 50.0 3.41e-01 97.5% 91.4%
4064871 1079.1.1.8 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.56 49.0 3.64e-01 96.2% 63.9%
3880145 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 41.0 3.88e-01 80.0% 82.7%
3644011 180.1.1.0 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.55 39.0 3.33e-01 87.5% 45.4%
3696682 604.9.1.9 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › DUF6604 0.55 45.0 3.22e-01 88.7% 81.7%
3816224 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.54 38.0 4.06e-01 75.0% 94.3%
3738892 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 36.0 3.69e-01 70.0% 75.0%
4456370 5086.1.1.99 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ApoL 0.53 44.0 4.24e-01 98.8% 80.0%
4990932 1079.1.1.8 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.53 48.0 3.58e-01 98.8% 59.5%
3858057 101.42.1.1 alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.53 42.0 4.31e-01 91.3% 100.0%
1297584 604.12.1.3 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Thia_YuaJ 0.53 41.0 3.31e-01 90.0% 60.5%
4317543 4044.1.1.1 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.51 44.0 3.55e-01 100.0% 50.3%
3714293 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.51 35.0 3.81e-01 71.2% 98.5%
3708809 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 36.0 3.94e-01 76.2% 100.0%
3352882 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.50 35.0 3.68e-01 72.5% 84.3%
D2 high residues 84-161
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 54.0 4.39e-01 83.3% 47.2%
3e29B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 46.0 3.82e-01 70.5% 77.6%
1s5uE00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 46.0 3.77e-01 70.5% 82.4%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 50.0 4.01e-01 88.5% 41.8%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 48.0 3.79e-01 79.5% 91.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.65 52.0 4.33e-01 87.2% 54.0%
5eo4A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 44.0 3.64e-01 70.5% 81.3%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 53.0 3.99e-01 98.7% 85.5%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.59 43.0 3.89e-01 78.2% 63.7%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.59 37.0 3.60e-01 80.8% 54.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 46.0 3.38e-01 89.7% 90.6%
3d3lA02 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 39.0 3.97e-01 71.8% 77.5%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 49.0 3.94e-01 100.0% 86.6%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 40.0 3.89e-01 74.4% 69.8%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 40.0 3.72e-01 75.6% 77.5%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.84e-01 83.3% 91.2%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 41.0 3.31e-01 80.8% 89.8%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 48.0 3.31e-01 100.0% 80.5%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 48.0 3.22e-01 100.0% 55.0%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 43.0 2.98e-01 87.2% 92.6%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 46.0 3.85e-01 96.2% 55.7%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.98e-01 93.6% 97.4%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 47.0 3.26e-01 100.0% 51.5%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.18e-01 98.7% 44.6%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.06e-01 100.0% 42.9%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.06e-01 78.2% 98.1%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 42.0 3.90e-01 96.2% 100.0%
2k0rA00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.50 36.0 3.11e-01 75.6% 78.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3291499 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 46.0 3.76e-01 97.4% 37.3%
3464481 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.65 47.0 3.00e-01 75.6% 24.8%
4356530 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.65 57.0 4.35e-01 100.0% 67.0%
4373611 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.63 54.0 4.23e-01 97.4% 74.3%
5070420 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.62 49.0 4.01e-01 84.6% 48.6%
4962518 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.61 50.0 3.92e-01 89.7% 72.0%
3196261 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.60 46.0 3.81e-01 96.2% 45.1%
5003963 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.60 53.0 3.34e-01 100.0% 27.7%
4161591 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.59 49.0 3.90e-01 91.0% 74.8%
4994605 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.59 51.0 4.08e-01 98.7% 78.2%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.33e-01 100.0% 41.8%
4284812 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.58 42.0 3.34e-01 75.6% 98.1%
3304580 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.58 44.0 3.61e-01 85.9% 94.4%
4132764 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 41.0 4.07e-01 76.9% 75.3%
2802354 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 40.0 2.83e-01 75.6% 27.8%
3505182 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 38.0 3.87e-01 100.0% 68.8%
3168944 5.1.4.97 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.57 50.0 3.16e-01 98.7% 87.6%
4114467 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.57 49.0 3.84e-01 100.0% 65.7%
3830571 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.56 48.0 3.63e-01 100.0% 67.0%
3512529 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.56 49.0 3.94e-01 100.0% 84.4%
4975431 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 40.0 3.87e-01 100.0% 67.8%
4806775 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 44.0 3.92e-01 88.5% 97.4%
3248970 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.55 44.0 3.94e-01 87.2% 99.1%
4975626 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 41.0 3.45e-01 82.1% 65.0%
3492270 11.16.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in A1 cistron-splicing factor AAR2 › N-terminal domain in A1 cistron-splicing factor AAR2 › AAR2_1st 0.55 43.0 3.33e-01 84.6% 76.0%
3947165 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 43.0 3.52e-01 87.2% 70.0%
3555766 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.54 43.0 3.22e-01 88.5% 68.6%
5033173 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.54 43.0 3.87e-01 87.2% 64.2%
4030445 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.93e-01 94.9% 40.5%
3937237 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.53 46.0 3.69e-01 100.0% 80.6%
4928052 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 45.0 3.04e-01 100.0% 33.4%
3699382 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.52 45.0 3.32e-01 100.0% 85.6%
3990176 883.1.1.22 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26547 0.52 45.0 3.42e-01 100.0% 60.0%
4996016 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.52 44.0 3.58e-01 98.7% 53.1%
4934439 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 45.0 2.80e-01 98.7% 27.2%
3819875 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 45.0 3.01e-01 100.0% 36.4%
3584129 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.51 45.0 2.74e-01 100.0% 42.9%
2448551 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.50 41.0 3.62e-01 100.0% 60.5%
3637185 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.50 43.0 3.18e-01 100.0% 93.9%