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IMGVR_UViG_3300033990_000450-3300033990-Ga0373184_0001995_28831_29046

Arc-Vir

IMGVR_UViG_3300033990_000450-3300033990-Ga0373184_0001995_28831_29046

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-70
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.93 81.0 7.12e-01 100.0% 66.3%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.88 81.0 7.09e-01 100.0% 69.1%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 68.0 6.51e-01 100.0% 72.3%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.87 81.0 7.33e-01 100.0% 82.2%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.87 80.0 7.13e-01 100.0% 79.2%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 66.0 5.78e-01 100.0% 56.8%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.86 66.0 6.15e-01 100.0% 66.2%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.86 79.0 6.16e-01 100.0% 52.6%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.86 75.0 7.10e-01 100.0% 80.6%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.86 66.0 4.59e-01 100.0% 26.9%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.86 73.0 5.35e-01 100.0% 37.1%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.85 78.0 6.18e-01 98.2% 71.7%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.85 71.0 5.33e-01 100.0% 39.0%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 76.0 6.72e-01 100.0% 95.1%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.84 77.0 6.91e-01 100.0% 75.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.83 75.0 6.14e-01 100.0% 66.7%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 72.0 7.05e-01 100.0% 87.1%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 74.0 6.71e-01 98.2% 81.6%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.82 75.0 5.66e-01 100.0% 46.9%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.82 75.0 6.44e-01 100.0% 69.8%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 74.0 5.67e-01 100.0% 52.0%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.81 68.0 6.54e-01 100.0% 82.8%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 72.0 6.77e-01 100.0% 85.3%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.80 58.0 6.31e-01 77.2% 100.0%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.80 67.0 6.70e-01 91.2% 100.0%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.79 59.0 5.03e-01 94.7% 50.0%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 72.0 6.70e-01 100.0% 95.7%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 69.0 6.65e-01 98.2% 96.9%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 69.0 6.91e-01 96.5% 100.0%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.78 70.0 5.84e-01 100.0% 69.4%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.77 68.0 5.17e-01 100.0% 78.2%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 68.0 6.26e-01 100.0% 78.1%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.76 68.0 6.03e-01 100.0% 85.0%
1ucuA01 6.10.280.190 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 65.0 6.23e-01 100.0% 88.2%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 65.0 5.90e-01 100.0% 92.3%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 64.0 5.96e-01 100.0% 77.0%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 66.0 5.33e-01 100.0% 62.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.73 62.0 4.92e-01 94.7% 54.3%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.73 64.0 6.11e-01 100.0% 86.6%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.73 61.0 5.75e-01 93.0% 80.0%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.73 63.0 5.75e-01 100.0% 90.9%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 57.0 5.32e-01 100.0% 72.0%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.70 58.0 4.99e-01 100.0% 55.9%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 57.0 5.12e-01 93.0% 63.9%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.70 59.0 4.67e-01 100.0% 45.8%
3qavA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.70 60.0 4.60e-01 100.0% 41.4%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 57.0 5.05e-01 100.0% 62.7%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.70 58.0 4.94e-01 100.0% 68.9%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 58.0 5.52e-01 100.0% 97.2%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.69 57.0 5.55e-01 94.7% 83.9%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 58.0 4.28e-01 96.5% 38.1%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 58.0 5.30e-01 100.0% 71.8%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.68 57.0 5.04e-01 100.0% 74.4%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.65 55.0 5.20e-01 100.0% 80.3%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.64 53.0 4.50e-01 100.0% 77.1%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 50.0 4.94e-01 94.7% 86.9%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.62 53.0 5.12e-01 96.5% 84.6%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 53.0 4.55e-01 100.0% 66.0%
5tprA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.62 53.0 3.55e-01 100.0% 25.0%
6whbA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 50.0 3.27e-01 93.0% 19.1%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.60 53.0 3.79e-01 98.2% 70.1%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.58 47.0 4.41e-01 100.0% 76.9%
7sf7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 45.0 3.09e-01 100.0% 21.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3473220 5086.1.1.209 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LIN9_C 0.96 86.0 6.59e-01 100.0% 47.0%
3933048 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.93 81.0 6.51e-01 100.0% 53.0%
5074487 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.90 84.0 4.90e-01 100.0% 14.7%
4401282 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.86 79.0 6.16e-01 100.0% 49.6%
4034092 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.86 80.0 7.19e-01 100.0% 94.7%
4303085 3755.3.1.467 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C 0.85 78.0 5.98e-01 100.0% 56.7%
4129922 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.85 79.0 6.37e-01 100.0% 71.0%
3596488 3737.1.1.0 alpha duplicates or obligate multimers › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats 0.85 78.0 5.90e-01 100.0% 45.6%
60297 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.84 77.0 6.95e-01 100.0% 76.0%
5035167 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.82 74.0 4.40e-01 100.0% 15.8%
3641527 192.8.1.353 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med10 0.82 76.0 6.67e-01 100.0% 71.2%
3350539 192.23.1.6 alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Med10 0.82 75.0 6.49e-01 100.0% 67.1%
3471023 164.1.1.15 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › PPPI_inhib 0.82 74.0 5.24e-01 100.0% 40.0%
3411073 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.81 74.0 6.17e-01 100.0% 65.3%
3698292 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.81 73.0 5.34e-01 100.0% 39.3%
3693258 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.81 74.0 5.82e-01 100.0% 54.5%
4941675 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.80 73.0 4.21e-01 100.0% 11.8%
4942772 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.80 72.0 6.90e-01 98.2% 86.2%
4051951 605.2.1.0 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.78 72.0 6.05e-01 100.0% 63.3%
5018387 604.18.1.0 alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) 0.76 69.0 5.53e-01 100.0% 61.0%
4784732 1130.1.1.1 alpha bundles › Mitochondrial complex I, PDSW subunit › Mitochondrial complex I, PDSW subunit › Mitochondrial complex I, PDSW subunit › NDUFB10 0.74 64.0 5.80e-01 100.0% 78.8%
3623190 174.1.1.31 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7027 0.73 63.0 4.64e-01 100.0% 37.5%
3699457 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 63.0 5.03e-01 100.0% 64.2%
3733682 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.73 64.0 4.14e-01 98.2% 80.8%
3930829 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 61.0 5.71e-01 100.0% 96.0%
3839497 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.72 62.0 5.49e-01 100.0% 80.0%
4334669 3456.1.1.1 extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4 0.71 62.0 4.80e-01 100.0% 52.3%
5029615 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 58.0 4.22e-01 96.5% 32.4%
4336724 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.70 59.0 4.90e-01 100.0% 65.5%
2572867 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.70 58.0 4.83e-01 100.0% 64.0%
4954892 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.69 57.0 3.58e-01 100.0% 16.3%
3701446 524.1.1.8 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC, RabGap-TBC_2 0.66 56.0 3.92e-01 98.2% 35.3%
3873779 2004.1.1.463 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd 0.63 50.0 3.08e-01 94.7% 44.1%
3236134 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.62 53.0 3.85e-01 100.0% 32.6%