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IMGVR_UViG_3300035034_003068-3300035034-Ga0374946_240870_307_801

Arc-Vir

IMGVR_UViG_3300035034_003068-3300035034-Ga0374946_240870_307_801

Identity

Kingdom:
archaea

Quality

79.5 mean pLDDT

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-81
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.75 63.0 5.57e-01 100.0% 64.5%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.74 60.0 5.35e-01 100.0% 62.1%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.68 60.0 5.79e-01 97.0% 100.0%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.67 58.0 5.72e-01 97.0% 100.0%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.65 59.0 4.77e-01 100.0% 56.1%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 3.78e-01 85.1% 65.5%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 30.0 3.13e-01 100.0% 51.6%
2aefA03 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.55 44.0 4.25e-01 100.0% 77.2%
1m5zA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 43.0 4.02e-01 100.0% 92.3%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 35.0 3.93e-01 98.5% 98.0%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 37.0 3.04e-01 80.6% 81.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083816 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.93 86.0 8.53e-01 100.0% 94.3%
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.77 61.0 6.47e-01 97.0% 96.6%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.70 57.0 6.00e-01 100.0% 98.3%
5025019 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.69 62.0 5.79e-01 100.0% 89.3%
5049149 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.69 61.0 5.98e-01 97.0% 98.6%
4991571 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.68 61.0 5.77e-01 100.0% 93.8%
4975116 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.68 61.0 5.75e-01 100.0% 92.5%
4602455 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.68 61.0 5.96e-01 100.0% 98.6%
3603211 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.68 61.0 5.74e-01 100.0% 91.3%
4956897 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.68 61.0 5.75e-01 100.0% 93.8%
3227803 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.68 60.0 6.10e-01 97.0% 100.0%
2984229 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 61.0 5.77e-01 100.0% 93.6%
5049869 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 60.0 5.72e-01 100.0% 95.0%
5083817 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.67 59.0 6.02e-01 97.0% 100.0%
4617493 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 60.0 5.68e-01 100.0% 93.8%
3205316 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 59.0 5.35e-01 98.5% 93.3%
3686775 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 59.0 5.46e-01 98.5% 94.1%
4950136 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.66 57.0 5.56e-01 95.5% 94.7%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.62 36.0 3.71e-01 89.6% 60.0%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 3.14e-01 88.1% 43.3%
3887433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 31.0 2.62e-01 100.0% 28.7%
3264808 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.56 34.0 3.37e-01 91.0% 55.7%
3688120 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 48.0 4.08e-01 100.0% 64.3%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.55 37.0 3.59e-01 89.6% 61.3%
3627859 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.54 37.0 3.56e-01 89.6% 61.3%
3302829 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.54 33.0 3.34e-01 91.0% 60.0%
D2 high residues 86-162
PDB
Domain cluster: rep: IMGVR_UViG_3300029718_000421-3300029718-Ga0245237_100005116__D105-159