Back to structures

IMGVR_UViG_3300035034_004270-3300035034-Ga0374946_173322_1853_2599

Arc-Vir

IMGVR_UViG_3300035034_004270-3300035034-Ga0374946_173322_1853_2599

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-126
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c6dA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 49.0 4.07e-01 78.0% 78.5%
6kykA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 43.0 3.88e-01 78.0% 97.6%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 42.0 3.33e-01 79.7% 56.6%
4efoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 41.0 3.62e-01 78.0% 83.1%
5lznA00 3.10.20.360 Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain 0.57 42.0 3.46e-01 79.7% 65.8%
2dafA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 42.0 3.91e-01 79.7% 96.1%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.55 32.0 3.85e-01 100.0% 94.4%
1bqbA01 3.10.170.10 Alpha Beta › Roll › Elastase; domain 1 › 0.55 45.0 3.51e-01 100.0% 63.6%
5xpcA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 40.0 3.59e-01 81.4% 78.8%
4rayA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.53 38.0 4.11e-01 78.0% 90.0%
2xigA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.53 38.0 3.96e-01 78.0% 81.8%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 38.0 3.03e-01 81.4% 61.9%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 44.0 4.09e-01 100.0% 98.8%
2fe3A02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.52 38.0 3.86e-01 78.0% 78.9%
5ffiE00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 45.0 3.80e-01 100.0% 100.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4329802 239.1.1.2 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_S6e 0.74 54.0 4.22e-01 78.0% 86.4%
4669955 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.73 53.0 4.14e-01 78.0% 96.0%
4475314 239.1.1.2 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_S6e 0.72 52.0 3.92e-01 78.0% 78.6%
5052368 806.1.1.1 a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N 0.70 51.0 3.38e-01 78.0% 47.5%
5064561 806.1.1.1 a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N 0.69 50.0 3.46e-01 78.0% 52.2%
4935410 806.1.1.1 a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N 0.69 50.0 3.42e-01 78.0% 53.0%
5054149 806.1.1.1 a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N 0.68 50.0 3.27e-01 78.0% 42.1%
3591075 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 49.0 4.40e-01 78.0% 94.1%
4968532 806.1.1.1 a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N 0.68 49.0 3.03e-01 78.0% 30.3%
4177746 80.1.1.1 beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.63 45.0 3.76e-01 78.0% 45.5%
5079246 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 46.0 3.90e-01 78.0% 93.7%
4995785 221.3.1.0 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.63 44.0 4.60e-01 76.3% 98.2%
3709956 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.62 45.0 4.22e-01 78.0% 95.9%
5013674 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.62 51.0 4.45e-01 100.0% 94.0%
3518216 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.61 45.0 4.14e-01 78.0% 93.3%
3252553 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 44.0 4.11e-01 78.0% 93.3%
5051200 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 44.0 4.03e-01 79.7% 97.5%
3783322 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.59 44.0 4.05e-01 79.7% 94.7%
5033637 221.1.1.75 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 0.58 42.0 4.15e-01 78.0% 93.8%
3635756 226.1.1.29 a+b two layers › POZ domain › POZ domain › POZ domain › PF30957 0.58 46.0 3.82e-01 93.2% 91.7%
4982816 221.1.1.75 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 0.58 42.0 4.06e-01 78.0% 89.9%
3422238 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.58 50.0 3.83e-01 100.0% 66.2%
3781794 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 42.0 3.74e-01 78.0% 84.7%
3687510 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 42.0 3.84e-01 79.7% 98.8%
5010227 221.1.1.75 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 0.56 41.0 4.00e-01 78.0% 93.8%
3618723 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.56 48.0 4.41e-01 100.0% 97.5%
5070651 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 41.0 3.99e-01 79.7% 95.4%
5012106 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.55 38.0 2.91e-01 78.0% 31.9%
4947515 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 3.97e-01 78.0% 100.0%
5032187 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 4.21e-01 100.0% 89.1%
3827973 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 41.0 2.65e-01 86.4% 96.9%
5024565 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.52 37.0 2.87e-01 79.7% 33.3%
3278973 375.1.1.185 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.52 33.0 3.71e-01 100.0% 95.0%
4991835 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 38.0 4.01e-01 100.0% 98.0%
D2 high residues 141-221
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6grjB01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.70 55.0 3.67e-01 84.0% 33.0%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 45.0 4.81e-01 72.8% 78.9%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 45.0 4.30e-01 87.7% 59.4%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.66 52.0 4.35e-01 84.0% 54.9%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.66 48.0 4.83e-01 80.2% 76.5%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 45.0 4.22e-01 77.8% 58.2%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.64 43.0 4.69e-01 74.1% 83.6%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.64 40.0 3.64e-01 87.7% 48.1%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 43.0 4.18e-01 70.4% 75.8%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.63 41.0 4.10e-01 75.3% 65.9%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 42.0 3.92e-01 75.3% 55.4%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 40.0 3.98e-01 81.5% 62.5%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.61 40.0 3.64e-01 71.6% 48.2%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.61 44.0 4.25e-01 76.5% 70.0%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 49.0 4.71e-01 87.7% 87.0%
3k17A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.60 40.0 3.31e-01 70.4% 39.3%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 39.0 3.78e-01 72.8% 66.0%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 38.0 3.18e-01 80.2% 40.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3956423 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.78 61.0 5.40e-01 84.0% 60.9%
3600869 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.75 56.0 4.96e-01 79.0% 65.2%
4994798 3646.1.1.0 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.74 59.0 4.42e-01 86.4% 35.5%
3997160 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.70 50.0 4.69e-01 75.3% 65.0%
3511084 3922.1.1.225 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF842 0.69 54.0 4.73e-01 85.2% 92.8%
3391978 3812.1.1.0 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.69 52.0 5.41e-01 81.5% 86.7%
5027222 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.69 50.0 5.47e-01 77.8% 98.5%
4029754 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.69 55.0 5.42e-01 87.7% 83.5%
4964387 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.69 53.0 4.97e-01 82.7% 71.0%
3743434 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.68 54.0 3.68e-01 85.2% 25.4%
3733140 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 50.0 4.01e-01 77.8% 49.7%
5036615 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.66 51.0 4.85e-01 82.7% 71.6%
1124196 3788.1.1.1 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR 0.65 45.0 4.22e-01 77.8% 58.2%
4958383 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.65 45.0 3.82e-01 71.6% 49.6%
4809272 3291.1.1.4 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.65 45.0 3.99e-01 72.8% 76.9%
3596488 3737.1.1.0 alpha duplicates or obligate multimers › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats 0.64 48.0 4.25e-01 81.5% 57.6%
3596574 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.64 50.0 3.99e-01 85.2% 100.0%
3989535 632.6.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.64 46.0 4.43e-01 76.5% 78.9%
4955276 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.63 47.0 4.15e-01 80.2% 60.8%
3346986 3711.1.1.4 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.63 54.0 4.07e-01 97.5% 69.3%
3195087 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.60 41.0 3.72e-01 70.4% 89.1%
3377936 3922.1.1.173 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF3493 0.58 42.0 4.20e-01 77.8% 75.3%
3965106 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.56 44.0 4.52e-01 82.7% 89.3%
4543996 3600.1.1.1 alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD 0.55 44.0 4.07e-01 87.7% 88.6%
5019536 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.54 45.0 3.33e-01 93.8% 45.3%