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IMGVR_UViG_3300035038_000087-3300035038-Ga0376512_02832_4025_4789
Arc-VirIMGVR_UViG_3300035038_000087-3300035038-Ga0376512_02832_4025_4789
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-148
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.65 | 25.0 | 3.29e-01 | 95.3% | 61.1% |
| 3oqiA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.58 | 46.0 | 3.86e-01 | 83.6% | 56.3% |
| 3oqvA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.56 | 44.0 | 3.70e-01 | 82.0% | 56.4% |
| 3focA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 40.0 | 3.09e-01 | 82.0% | 34.4% |
| 1n3lA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 41.0 | 3.49e-01 | 82.0% | 52.6% |
| 2x9qB00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.51 | 38.0 | 3.27e-01 | 78.9% | 49.1% |
| 1j1uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 38.0 | 3.36e-01 | 82.0% | 52.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942624 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.90 | 80.0 | 5.39e-01 | 100.0% | 29.2% |
| 5031517 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.87 | 78.0 | 4.91e-01 | 100.0% | 21.2% |
| 4895332 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 75.0 | 4.84e-01 | 100.0% | 24.0% |
| 2404828 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 46.0 | 3.87e-01 | 82.0% | 55.3% |
| 4355422 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.59 | 42.0 | 3.82e-01 | 99.2% | 53.7% |
| 3288241 | 2005.1.1.31 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CDPS | 0.59 | 46.0 | 3.78e-01 | 82.0% | 51.3% |
| 3782106 | 2004.1.1.65 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K | 0.58 | 47.0 | 3.94e-01 | 87.5% | 74.7% |
| 3957695 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.57 | 27.0 | 2.77e-01 | 99.2% | 42.5% |
| 4047423 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.55 | 34.0 | 3.53e-01 | 96.9% | 65.8% |
| 178079 | 2005.1.1.31 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CDPS | 0.54 | 41.0 | 3.43e-01 | 80.5% | 51.1% |
| 3738725 | 2004.1.1.65 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K | 0.54 | 48.0 | 3.93e-01 | 99.2% | 73.3% |
| 4022906 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.53 | 37.0 | 2.83e-01 | 72.7% | 81.0% |
| 3730625 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.51 | 37.0 | 2.95e-01 | 76.6% | 74.3% |
D2
high
residues 156-252
Domain cluster:
rep: BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00126__D230-350
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 73.1 | 3.00e-20 | 92.8% | 16.2% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4chkB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 31.0 | 3.26e-01 | 71.1% | 54.9% |
| 3duzA02 | 2.40.50.710 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 30.0 | 3.75e-01 | 86.6% | 90.7% |
| 2dlgA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 33.0 | 3.64e-01 | 76.3% | 75.0% |
| 1oypA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.53 | 39.0 | 3.10e-01 | 77.3% | 54.7% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 38.0 | 2.81e-01 | 79.4% | 78.2% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 34.0 | 3.46e-01 | 70.1% | 85.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012376 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.90 | 81.0 | 4.85e-01 | 94.8% | 15.7% |
| 4974476 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.87 | 77.0 | 4.56e-01 | 93.8% | 14.4% |
| 4976938 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.87 | 80.0 | 4.74e-01 | 97.9% | 15.6% |
| 5057094 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.86 | 76.0 | 4.62e-01 | 100.0% | 17.0% |
| 5048774 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.85 | 73.0 | 4.36e-01 | 90.7% | 15.1% |
| 4954935 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 64.0 | 3.80e-01 | 79.4% | 15.2% |
| 5001541 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 72.0 | 4.28e-01 | 90.7% | 14.3% |
| 4934728 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 73.0 | 4.40e-01 | 93.8% | 15.3% |
| 5004456 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 76.0 | 4.50e-01 | 97.9% | 15.0% |
| 5079907 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.83 | 74.0 | 4.45e-01 | 95.9% | 16.0% |
| 3603295 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.82 | 62.0 | 3.78e-01 | 79.4% | 13.8% |
| 4982642 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.81 | 68.0 | 4.18e-01 | 90.7% | 16.8% |
| 5031517 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.80 | 69.0 | 4.18e-01 | 92.8% | 16.5% |
| 5037353 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.78 | 72.0 | 4.34e-01 | 100.0% | 16.7% |
| 5027411 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.75 | 67.0 | 4.11e-01 | 99.0% | 17.0% |
| 5074578 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.71 | 64.0 | 3.88e-01 | 97.9% | 16.5% |
| 4970624 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.70 | 58.0 | 3.60e-01 | 89.7% | 16.6% |
| 3296431 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.61 | 33.0 | 3.33e-01 | 72.2% | 52.6% |
| 3833645 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.58 | 34.0 | 2.42e-01 | 87.6% | 19.1% |
| 3452055 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.55 | 34.0 | 3.39e-01 | 70.1% | 60.0% |
| 3973684 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.54 | 39.0 | 3.46e-01 | 74.2% | 74.8% |
| 3307438 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.54 | 37.0 | 3.46e-01 | 72.2% | 80.0% |
| 4430962 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.52 | 38.0 | 3.56e-01 | 76.3% | 87.5% |
| 3785832 | 3792.1.1.2 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd | 0.51 | 36.0 | 3.77e-01 | 89.7% | 80.0% |
| 3607580 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 39.0 | 3.09e-01 | 85.6% | 81.8% |