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IMGVR_UViG_3300035038_000097-3300035038-Ga0376512_01686_1489_1896
Arc-VirIMGVR_UViG_3300035038_000097-3300035038-Ga0376512_01686_1489_1896
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-75
Domain cluster:
rep: IMGVR_UViG_3300038855_000068-3300038855-Ga0237916_00146_3212_3622__D19-78
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.80 | 73.0 | 6.14e-01 | 100.0% | 62.4% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.78 | 67.0 | 5.66e-01 | 100.0% | 58.9% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.77 | 61.0 | 4.73e-01 | 100.0% | 40.7% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.60 | 51.0 | 4.84e-01 | 100.0% | 98.6% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.58 | 48.0 | 4.57e-01 | 100.0% | 98.6% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 41.0 | 3.60e-01 | 88.1% | 54.7% |
| 3g8rA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.52 | 44.0 | 3.98e-01 | 94.9% | 72.8% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 36.0 | 2.90e-01 | 78.0% | 60.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.89 | 75.0 | 7.73e-01 | 100.0% | 96.4% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.85 | 75.0 | 7.53e-01 | 100.0% | 94.9% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.83 | 66.0 | 6.69e-01 | 100.0% | 84.7% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.83 | 76.0 | 7.32e-01 | 100.0% | 98.5% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.80 | 73.0 | 6.00e-01 | 100.0% | 58.0% |
| 4988093 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 72.0 | 5.86e-01 | 100.0% | 65.4% |
| 5083172 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.78 | 64.0 | 6.66e-01 | 94.9% | 100.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.72 | 61.0 | 6.16e-01 | 100.0% | 93.3% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 67.0 | 6.30e-01 | 100.0% | 90.0% |
| 3602933 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.68 | 61.0 | 5.93e-01 | 100.0% | 90.8% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.68 | 59.0 | 5.88e-01 | 100.0% | 93.3% |
| 3227803 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.61 | 52.0 | 5.14e-01 | 100.0% | 98.5% |
| 4953517 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.60 | 52.0 | 4.86e-01 | 100.0% | 90.5% |
| 4617493 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.59 | 50.0 | 4.61e-01 | 100.0% | 90.0% |
| 4930449 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.58 | 49.0 | 4.58e-01 | 98.3% | 93.3% |
| 4975116 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.58 | 48.0 | 4.49e-01 | 100.0% | 88.7% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.57 | 48.0 | 4.53e-01 | 100.0% | 95.9% |
| 4409168 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.51 | 43.0 | 4.15e-01 | 96.6% | 81.4% |
D2
high
residues 79-130
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.75 | 67.0 | 5.48e-01 | 100.0% | 62.4% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 38.0 | 3.58e-01 | 82.7% | 54.7% |
| 3zo9B03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 34.0 | 2.88e-01 | 88.5% | 33.7% |
| 1vziA01 | 2.20.28.100 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain | 0.53 | 30.0 | 3.31e-01 | 78.8% | 68.4% |
| 2jz4A01 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.50 | 39.0 | 3.04e-01 | 98.1% | 93.2% |
| 3d4rE01 | 2.40.128.400 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 36.0 | 3.22e-01 | 82.7% | 86.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.80 | 72.0 | 7.14e-01 | 100.0% | 96.4% |
| 3960372 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 55.0 | 4.72e-01 | 100.0% | 51.8% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 63.0 | 5.75e-01 | 100.0% | 90.0% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 63.0 | 6.06e-01 | 100.0% | 94.9% |
| 3948608 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.68 | 56.0 | 5.29e-01 | 94.2% | 93.8% |
| 5005052 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 52.0 | 5.13e-01 | 100.0% | 92.7% |
| 3993566 | 3613.1.1.2 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › NOL9_C | 0.61 | 54.0 | 4.04e-01 | 100.0% | 65.4% |
| 4315579 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.61 | 53.0 | 4.07e-01 | 100.0% | 58.3% |
| 3435006 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.57 | 45.0 | 4.22e-01 | 86.5% | 69.2% |
| 4600813 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.57 | 47.0 | 3.77e-01 | 100.0% | 45.5% |
| 4514731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 39.0 | 3.42e-01 | 88.5% | 45.9% |
| 3754210 | 3896.1.1.2 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 | 0.52 | 39.0 | 2.50e-01 | 82.7% | 37.9% |
| 3978321 | 11.1.5.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Fimbrial | 0.52 | 35.0 | 2.64e-01 | 71.2% | 40.7% |
| 3172185 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 42.0 | 3.46e-01 | 100.0% | 51.8% |
| 4950769 | 3987.1.1.0 ↗ | a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain | 0.51 | 43.0 | 3.51e-01 | 100.0% | 78.1% |